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Report for CCDS6949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6949.1 Public Homo sapiens 9 CFAP77 24 110 108 CCDS HistoryNCBI Gene:389799Re-query CCDS DB by CCDS ID:6949.1Re-query CCDS DB by GeneID:389799See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6949.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343036.6 ENSP00000343290.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343036.6Link to Ensembl Protein Viewer:ENSP00000343290.2Re-query CCDS DB by Nucleotide ID:ENST00000343036Re-query CCDS DB by Protein ID:ENSP00000343290
Original member Current member NCBI NM_207417.3 NP_997300.1 Accepted alive Link to Nucleotide Sequence:NM_207417.3Link to Protein Sequence:NP_997300.1Re-query CCDS DB by Nucleotide ID:NM_207417Re-query CCDS DB by Protein ID:NP_997300Link to BLAST:NP_997300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997300.1 320 Q6ZQR2-1 320 100% 0 0

Chromosomal Locations for CCDS 6949.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 132410272 132410466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132482310 132482417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132498695 132498794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132499372 132499600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132537601 132537706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132542946 132543047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132572388 132572510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGCCAGAGGCCAGGAGCTCCGGCCCGGACCTCACGCGATGGAGGAAGCAGCAGCAGCCTGTGCGCCGCA
CGGTCAGCCAGGTCTGCCCGCCCCCGCGGCGGCCCCTGACCGTGGCGGACATCCGTTCCGGCATGGAGAA
CGAGCGGCTGGGGGTCGTGCGGGACTCCATGTTTCAGAACCCTCTCATCGTCAAGGCTGCCGGCCCGGCC
TCGGTGGGAACCTCTTATTCTGTTTATGACTCCTCAGCGGTGCAGAAAGTTATTCCTTCCCTTGCTGGAC
ACCACATCAAAGGAGGCCCACAGGCTGAACTCGGCAAGCCCCGGGAAAGAAGCTACAGTCTGCCCGGCAT
TAATTTTAATTATGGACTCTACATCCGAGGGCTTGACGGAGGAGTCCCTGAAGCCATCGGACGCTGGAAC
GTGTTCAAGCAGCAGCCCACCTGCCCCCACGAGCTGACCCGGAATTATATCGCAATGAACCGCGGGGCGG
TGAAAGCCGGCCTGGTGACTGCCCGGGAGAACTTGCTCTACCGTCAGCTCAATGACATCCGCATCAGTGA
CCAGGATGACCGGCGCATGAAGAAAGAGCCGCCCCCTCTCCCTCCAAACATGACATTTGGGATCCGGGCA
CGGCCTTCCACACCCTTCTTTGATCTGCTGCAGCACCGGTACCTGCAGCTGTGGGTACAGGAACAAAAGG
CCACCCAGAAAGCCATCAAACTGGAGAAGAAGCAGAAGGTGGTCCTTGGGAAGCTGTATGAGACCCGGAG
CAGTCAGCTGAGGAAGTACAAGCCGCCCGTGAAGCTGGACACCCTCTGGCACATGCCTCACTTCCAGAAG
GTGGGCCGCCACCTTGATACGTTCCCCACGGAGGCCGATCGCCAGAGAGCATTAAAAGCCCACCGGGAAG
AGTGTGCCGTGCGCCAGGGGACCCTGCGGATGGGCAACTACACCCACCCCTAG

Translation (320 aa):
MPEARSSGPDLTRWRKQQQPVRRTVSQVCPPPRRPLTVADIRSGMENERLGVVRDSMFQNPLIVKAAGPA
SVGTSYSVYDSSAVQKVIPSLAGHHIKGGPQAELGKPRERSYSLPGINFNYGLYIRGLDGGVPEAIGRWN
VFKQQPTCPHELTRNYIAMNRGAVKAGLVTARENLLYRQLNDIRISDQDDRRMKKEPPPLPPNMTFGIRA
RPSTPFFDLLQHRYLQLWVQEQKATQKAIKLEKKQKVVLGKLYETRSSQLRKYKPPVKLDTLWHMPHFQK
VGRHLDTFPTEADRQRALKAHREECAVRQGTLRMGNYTHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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