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Report for CCDS69069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69069.1 Public Homo sapiens 6 TRIM40 24 110 108 CCDS HistoryNCBI Gene:135644Re-query CCDS DB by CCDS ID:69069.1Re-query CCDS DB by GeneID:135644See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 69069.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376724.6 ENSP00000365914.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376724.6Link to Ensembl Protein Viewer:ENSP00000365914.2Re-query CCDS DB by Nucleotide ID:ENST00000376724Re-query CCDS DB by Protein ID:ENSP00000365914
Original member Current member EBI ENST00000396581.6 ENSP00000379826.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396581.6Link to Ensembl Protein Viewer:ENSP00000379826.1Re-query CCDS DB by Nucleotide ID:ENST00000396581Re-query CCDS DB by Protein ID:ENSP00000379826
Original member Current member NCBI NM_001286633.2 NP_001273562.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001286633.2Link to Protein Sequence:NP_001273562.1Re-query CCDS DB by Nucleotide ID:NM_001286633Re-query CCDS DB by Protein ID:NP_001273562Link to BLAST:NP_001273562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273562.1 258 Q6P9F5-1 258 100% 0 0

Chromosomal Locations for CCDS 69069.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30137037 30137381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30145994 30146089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30146985 30147209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30147520 30147542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30147725 30147812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGATCCCTTTGCAGAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGG
CCGTGAGCACCAACTGCGGACATCTCTTCTGTCGAGTGTGCCTGACACAGCATGTGGAGAAGGCCTCAGC
CTCTGGGGTCTTCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTAGGGACAGGCTATATC
TGCCCCAACCACCAGAAGAGGGTGTGCAGGTTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCC
TGGTGTCCCCTGAACACATGTCTCATCATGAACTGACCATTGAAAATGCCCTCAGCCACTACAAGGAACG
ACTCAATCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGGCTCAAGGCTCAGCAGGAG
AAGAAACTGCAGGCTCTGCAGTTTCAGGTAGACCACGGGAACCACAGGCTGGAGGCTGGGCCGGAGAGCC
AGCACCAAACCAGGGAACAGCTGGGTGCCCTCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGC
AGAAGCGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGAAGCCTGGTCATTGATCTGGAA
AGGACGGCCAAGGAATTAGACACCAACACACTGAAGAATGCTGGTGACTTACTGAACAGGAGTGCTCCAC
AGAAATTAGAGGTTATTTATCCCCAGTTGGAGAAAGGAGTCAGTGAATTGCTTCTTCAGCCCCCTCAGAA
GCTCTGA

Translation (258 aa):
MIPLQKDNQEEGVCPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPCSEEVLGTGYI
CPNHQKRVCRFCEESRLLLCVECLVSPEHMSHHELTIENALSHYKERLNRRSRKLRKDIAELQRLKAQQE
KKLQALQFQVDHGNHRLEAGPESQHQTREQLGALPQQWLGQLEHMPAEAARILDISRAVTQLRSLVIDLE
RTAKELDTNTLKNAGDLLNRSAPQKLEVIYPQLEKGVSELLLQPPQKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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