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Report for CCDS6901.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6901.2 Public Homo sapiens 9 CERCAM 24 110 108 CCDS HistoryNCBI Gene:51148Re-query CCDS DB by CCDS ID:6901.2Re-query CCDS DB by GeneID:51148See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 6901.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology support.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6901.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372838.9 ENSP00000361929.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372838.9Link to Ensembl Protein Viewer:ENSP00000361929.4Re-query CCDS DB by Nucleotide ID:ENST00000372838Re-query CCDS DB by Protein ID:ENSP00000361929
Original member Current member NCBI NM_016174.5 NP_057258.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016174.5Link to Protein Sequence:NP_057258.3Re-query CCDS DB by Nucleotide ID:NM_016174Re-query CCDS DB by Protein ID:NP_057258Link to BLAST:NP_057258.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057258.3 595 Q5T4B2-1 595 100% 0 0

Chromosomal Locations for CCDS 6901.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 128420878 128421074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128422868 128422978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128423146 128423263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128424138 128424272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128424410 128424614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128428302 128428421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128428757 128428833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128428930 128429036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128431171 128431303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128434102 128434229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128434410 128434613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128435653 128435905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGCGCGCTGCCCGCGCCGCGCCGCTGCTCCAGCTGCTGCTCCTGCTGGGGCCGTGGCTGGAGGCTGCGG
GCGTTGCGGAGTCGCCGCTGCCCGCCGTGGTCCTTGCCATCCTGGCCCGCAATGCCGAACACTCGCTGCC
CCACTACCTGGGCGCTCTGGAGCGGCTGGACTACCCCCGGGCCAGGATGGCCCTCTGGTGTGCCACGGAC
CACAATGTGGACAACACCACAGAGATGCTGCAGGAGTGGCTGGCGGCTGTGGGCGATGACTATGCTGCTG
TGGTCTGGAGGCCTGAGGGCGAGCCCAGGTTCTACCCAGATGAAGAGGGTCCCAAGCACTGGACCAAAGA
AAGGCACCAGTTTCTGATGGAGCTGAAGCAGGAAGCCCTCACCTTTGCCAGGAACTGGGGGGCCGACTAT
ATCCTGTTTGCAGACACAGACAACATTCTGACCAACAATCAGACTCTGCGGCTTCTCATGGGGCAGGGGC
TTCCAGTGGTGGCCCCAATGCTGGACTCCCAGACCTACTACTCCAACTTCTGGTGTGGGATCACCCCCCA
GGGCTACTACCGCCGCACAGCCGAGTACTTCCCCACCAAGAACCGCCAGCGCCGGGGCTGCTTCCGTGTC
CCCATGGTCCACTCCACCTTCCTTGCATCCCTGCGGGCTGAAGGGGCAGACCAGCTTGCTTTCTACCCGC
CACATCCCAACTACACTTGGCCTTTCGACGACATCATCGTCTTCGCCTATGCCTGCCAGGCTGCTGGGGT
CTCCGTCCACGTGTGCAATGAGCACCGTTATGGGTACATGAATGTGCCGGTGAAATCCCACCAGGGGCTG
GAAGACGAGAGGGTCAACTTCATCCACCTGATCTTAGAAGCACTAGTGGACGGCCCCCGCATGCAGGCCT
CAGCTCATGTGACTCGGCCCTCTAAGAGGCCCAGCAAGATAGGGTTTGACGAGGTCTTTGTCATCAGCCT
GGCTCGCAGGCCTGACCGTCGGGAACGCATGCTCGCCTCGCTCTGGGAGATGGAGATCTCTGGGAGGGTG
GTGGACGCTGTGGATGGCTGGATGCTCAACAGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCGG
GCTACCAGGACCCTTACTCGGGCCGCACTCTGACCAAGGGCGAGGTGGGCTGCTTCCTCAGCCATTACTC
CATCTGGGAAGAGGTGGTTGCCAGGGGCCTGGCCCGGGTCCTGGTGTTTGAGGATGACGTGCGCTTTGAG
AGCAACTTCAGGGGGCGGCTGGAGCGGCTGATGGAGGATGTGGAGGCAGAGAAACTGTCTTGGGACCTGA
TCTACCTCGGACGGAAGCAGGTGAACCCTGAGAAGGAGACGGCCGTGGAGGGGCTGCCGGGCCTGGTGGT
GGCTGGGTACTCCTACTGGACGCTGGCCTATGCCCTGCGTCTGGCGGGTGCCCGCAAGCTGCTGGCCTCA
CAGCCTCTGCGCCGCATGCTGCCCGTGGACGAGTTCCTGCCCATCATGTTCGACCAGCACCCCAACGAGC
AGTACAAGGCACACTTCTGGCCACGGGACCTGGTGGCCTTCTCCGCCCAGCCCCTGCTCGCTGCCCCTAC
CCACTATGCCGGGGACGCCGAGTGGCTCAGTGACACGGAGACATCCTCTCCATGGGATGATGACAGCGGC
CGCCTCATCAGCTGGAGCGGCTCCCAAAAGACCCTGCGCAGCCCCCGCCTGGACCTGACTGGCAGCAGCG
GGCACAGCCTCCAACCCCAGCCCCGAGATGAGCTCTAG

Translation (595 aa):
MRAARAAPLLQLLLLLGPWLEAAGVAESPLPAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATD
HNVDNTTEMLQEWLAAVGDDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQFLMELKQEALTFARNWGADY
ILFADTDNILTNNQTLRLLMGQGLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRRGCFRV
PMVHSTFLASLRAEGADQLAFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGL
EDERVNFIHLILEALVDGPRMQASAHVTRPSKRPSKIGFDEVFVISLARRPDRRERMLASLWEMEISGRV
VDAVDGWMLNSSAIRNLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVARGLARVLVFEDDVRFE
SNFRGRLERLMEDVEAEKLSWDLIYLGRKQVNPEKETAVEGLPGLVVAGYSYWTLAYALRLAGARKLLAS
QPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLVAFSAQPLLAAPTHYAGDAEWLSDTETSSPWDDDSG
RLISWSGSQKTLRSPRLDLTGSSGHSLQPQPRDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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