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Report for CCDS6862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6862.1 Public Homo sapiens 9 RABEPK 24 110 108 CCDS HistoryNCBI Gene:10244Re-query CCDS DB by CCDS ID:6862.1Re-query CCDS DB by GeneID:10244See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6862.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373538.8 ENSP00000362639.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373538.8Link to Ensembl Protein Viewer:ENSP00000362639.3Re-query CCDS DB by Nucleotide ID:ENST00000373538Re-query CCDS DB by Protein ID:ENSP00000362639
Original member Current member EBI ENST00000394125.8 ENSP00000377683.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394125.8Link to Ensembl Protein Viewer:ENSP00000377683.4Re-query CCDS DB by Nucleotide ID:ENST00000394125Re-query CCDS DB by Protein ID:ENSP00000377683
Original member Current member NCBI NM_001174152.2 NP_001167623.1 Accepted alive Link to Nucleotide Sequence:NM_001174152.2Link to Protein Sequence:NP_001167623.1Re-query CCDS DB by Nucleotide ID:NM_001174152Re-query CCDS DB by Protein ID:NP_001167623Link to BLAST:NP_001167623.1
Original member Current member NCBI NM_005833.4 NP_005824.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005833.4Link to Protein Sequence:NP_005824.2Re-query CCDS DB by Nucleotide ID:NM_005833Re-query CCDS DB by Protein ID:NP_005824Link to BLAST:NP_005824.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167623.1 372 Q7Z6M1-1 372 100% 0 0
NP_005824.2 372 Q7Z6M1-1 372 100% 0 0

Chromosomal Locations for CCDS 6862.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 125203014 125203066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125207564 125207721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125213370 125213522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125220539 125220700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125227910 125228059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125232596 125232745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125233688 125233980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGAAGCAACTGCCAGTCTTGGAACCTGGAGACAAGCCCAGGAAAGCAACATGGTACACCTTGACTGTCC
CTGGAGACAGCCCCTGTGCTCGAGTTGGCCACAGCTGTTCATATTTACCCCCAGTTGGTAATGCCAAGAG
AGGGAAGGTCTTCATTGTTGGGGGAGCAAATCCAAACAGAAGCTTCTCAGACGTGCACACCATGGATCTG
GGAAAACACCAGTGGGACTTAGATACCTGCAAGGGCCTCTTGCCCCGGTATGAACATGCTAGCTTCATTC
CCTCCTGCACACCTGACCGTATCTGGGTATTTGGAGGTGCCAACCAATCAGGAAATCGAAATTGTCTACA
AGTCCTGAATCCTGAAACCAGGACGTGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAGAACA
TTCCACACATCATCGGCAGCCATTGGAAACCAGCTATATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGC
CCGTGCAGGACACGAAGCTGCATGTGTTTGACGCAAACACTCTGACCTGGTCACAGCCAGAGACACTTGG
AAATCCTCCATCTCCCCGGCATGGTCATGTGATGGTGGCAGCAGGGACAAAGCTCTTCATCCACGGAGGC
TTGGCGGGGGACAGATTCTATGATGACCTCCACTGCATTGATATAAGTGACATGAAATGGCAGAAGCTAA
ATCCCACTGGGGCTGCTCCAGCAGGCTGTGCTGCCCACTCAGCTGTGGCCATGGGAAAACATGTGTACAT
CTTTGGTGGAATGACTCCTGCAGGAGCACTGGACACAATGTACCAGTATCACACAGAAGAGCAGCATTGG
ACCTTGCTTAAATTTGATACTCTTCTACCCCCTGGACGATTGGACCATTCCATGTGTATCATTCCATGGC
CAGTGACGTGTGCTTCTGAGAAAGAAGATTCCAACTCTCTCACTCTGAACCATGAAGCTGAGAAAGAGGA
TTCAGCTGACAAAGTAATGAGCCACAGTGGTGACTCACATGAGGAAAGCCAGACTGCTACACTGCTCTGT
TTGGTGTTTGGTGGGATGAATACAGAAGGGGAAATCTATGACGATTGTATTGTGACTGTAGTGGACTAA

Translation (372 aa):
MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDVHTMDL
GKHQWDLDTCKGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEVTSPPPSPRT
FHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGG
LAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTEEQHW
TLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLC
LVFGGMNTEGEIYDDCIVTVVD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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