NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6861.1 Public Homo sapiens 9 PPP6C 24 110 108 CCDS HistoryNCBI Gene:5537Re-query CCDS DB by CCDS ID:6861.1Re-query CCDS DB by GeneID:5537See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6861.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373547.9 ENSP00000362648.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373547.9Link to Ensembl Protein Viewer:ENSP00000362648.4Re-query CCDS DB by Nucleotide ID:ENST00000373547Re-query CCDS DB by Protein ID:ENSP00000362648
Original member Current member NCBI NM_002721.5 NP_002712.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002721.5Link to Protein Sequence:NP_002712.1Re-query CCDS DB by Nucleotide ID:NM_002721Re-query CCDS DB by Protein ID:NP_002712Link to BLAST:NP_002712.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002712.1 305 O00743-1 305 100% 0 0

Chromosomal Locations for CCDS 6861.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 125149673 125149921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125153533 125153742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125153906 125153985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125158241 125158382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125160841 125160906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125171085 125171180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125189644 125189718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGCGCCGCTAGACCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACC
TGAAGCGGCTATGTGACTACGTTTGTGACCTCCTCTTAGAAGAGTCAAATGTTCAGCCAGTATCAACACC
AGTAACAGTGTGTGGAGATATCCATGGACAGTTTTATGACCTTTGTGAACTGTTCAGAACTGGAGGTCAG
GTTCCTGACACAAACTACATATTTATGGGTGATTTTGTAGACAGAGGTTACTATAGTTTGGAGACCTTCA
CTTACCTTCTTGCATTAAAGGCTAAATGGCCTGATCGTATTACACTTTTGCGAGGAAATCATGAGAGTAG
ACAGATAACACAGGTCTATGGATTTTATGATGAGTGCCAAACCAAATATGGAAATGCTAATGCCTGGAGA
TACTGTACCAAAGTTTTTGACATGCTCACAGTAGCAGCTTTAATAGATGAGCAGATTTTGTGTGTCCATG
GTGGTTTATCTCCTGATATCAAAACACTGGATCAAATTCGAACCATCGAACGGAATCAGGAAATTCCTCA
TAAAGGAGCATTTTGTGATCTGGTTTGGTCAGATCCTGAAGATGTGGATACCTGGGCTATCAGTCCCCGA
GGAGCAGGTTGGCTTTTTGGAGCAAAGGTCACAAATGAGTTTGTTCATATCAACAACTTAAAACTCATCT
GCAGAGCACATCAACTAGTGCACGAAGGCTATAAATTTATGTTTGATGAGAAGCTGGTGACAGTATGGTC
TGCTCCTAATTACTGCTATCGTTGTGGAAATATTGCTTCGATCATGGTCTTCAAAGATGTAAATACAAGA
GAACCAAAGTTATTCCGGGCAGTTCCAGATTCAGAACGTGTTATTCCTCCCAGAACGACAACGCCATATT
TCCTTTGA

Translation (305 aa):
MAPLDLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQ
VPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTKYGNANAWR
YCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVWSDPEDVDTWAISPR
GAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTR
EPKLFRAVPDSERVIPPRTTTPYFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH