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Report for CCDS68345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
68345.1 Public Homo sapiens 3 TAMM41 24 110 108 CCDS HistoryNCBI Gene:132001Re-query CCDS DB by CCDS ID:68345.1Re-query CCDS DB by GeneID:132001See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 68345.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455809.6 ENSP00000398596.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000455809.6Link to Ensembl Protein Viewer:ENSP00000398596.1Re-query CCDS DB by Nucleotide ID:ENST00000455809Re-query CCDS DB by Protein ID:ENSP00000398596
Original member Current member NCBI NM_001284401.2 NP_001271330.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001284401.2Link to Protein Sequence:NP_001271330.1Re-query CCDS DB by Nucleotide ID:NM_001284401Re-query CCDS DB by Protein ID:NP_001271330Link to BLAST:NP_001271330.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271330.1 337 Q96BW9-3 337 100% 0 0

Chromosomal Locations for CCDS 68345.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 11790505 11790581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11807833 11807895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11809517 11809682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11817192 11817337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11829714 11829864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11839222 11839314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11844029 11844211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11846502 11846636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGCGCTGCAGACGCTGCAGAGCTCGTGGGTGACCTTCCGCAAGATCCTGTCTCACTTCCCCGAGGAGC
TGAGTCTGGCTTTCGTCTACGGCTCCGGGGTGTACCGCCAGGCAGGGCCGAGTTCAGACCAGAAGAATGC
TATGCTGGACTTTGTGTTCACAGTAGATGACCCTGTCGCATGGCATTCAAAGAACCTGAAGAAAAATTGG
AGTCACTACTCTTTCCTAAAAGTTTTAGGGCCCAAGATTATCACGTCCATCCAGAATAACTATGGCGCTG
GAGTTTACTACAATTCATTGATCATGTGTAATGGTAGGCTTATCAAATATGGAGTTATTAGCACTAACGT
TCTGATTGAAGATCTCCTCAACTGGAATAACTTATACATTGCTGGACGACTCCAAAAACCGGTGAAAATT
ATCTCAGTGAACGAGGATGTCACTCTTAGATCAGCCCTCGATAGAAATCTGAAGAGTGCTGTGACCGCTG
CTTTCCTCATGCTCCCCGAAAGCTTTTCTGAAGAAGACCTCTTCATAGAGATTGCCGGTCTCTCCTATTC
AGGTGACTTTCGGATGGTGGTTGGAGAAGATAAAACAAAAGTGTTGAATATTGTGAAGCCCAATATAGCC
CACTTTCGAGAGCTCTATGGCAGCATACTACAGGAAAATCCTCAAGTGGTGTATAAAAGCCAGCAAGGCT
GGCTGGAGATAGATAAAAGCCCAGAAGGACAGTTCACTCAGCTGATGACATTGCCCAAAACCTTACAGCA
ACAGATAAATCATATTATGGACCCTCCTGGAAAAAACAGAGATGTGGAAGAAACTTTATTCCAAGTGGCT
CATGATCCCGACTGTGGAGATGTGGTGCGACTAGGGCTTTCAGCAATCGTGAGACCGTCTAGTATAAGAC
AGAGCACGAAAGGCATTTTTACTGCTGGCCTGAAGAAGTCAGTGATTTATAGTTCACTAAAACTGCACAA
AATGTGGAAAGGGTGGCTGAGGAAAACATCCTGA

Translation (337 aa):
MALQTLQSSWVTFRKILSHFPEELSLAFVYGSGVYRQAGPSSDQKNAMLDFVFTVDDPVAWHSKNLKKNW
SHYSFLKVLGPKIITSIQNNYGAGVYYNSLIMCNGRLIKYGVISTNVLIEDLLNWNNLYIAGRLQKPVKI
ISVNEDVTLRSALDRNLKSAVTAAFLMLPESFSEEDLFIEIAGLSYSGDFRMVVGEDKTKVLNIVKPNIA
HFRELYGSILQENPQVVYKSQQGWLEIDKSPEGQFTQLMTLPKTLQQQINHIMDPPGKNRDVEETLFQVA
HDPDCGDVVRLGLSAIVRPSSIRQSTKGIFTAGLKKSVIYSSLKLHKMWKGWLRKTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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