NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6834.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6834.3 Public Homo sapiens 9 TTLL11 24 110 108 CCDS HistoryNCBI Gene:158135Re-query CCDS DB by CCDS ID:6834.3Re-query CCDS DB by GeneID:158135See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6834.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373776.5 ENSP00000362881.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373776.5Link to Ensembl Protein Viewer:ENSP00000362881.4Re-query CCDS DB by Nucleotide ID:ENST00000373776Re-query CCDS DB by Protein ID:ENSP00000362881
Original member Current member NCBI NM_194252.3 NP_919228.3 Accepted alive Link to Nucleotide Sequence:NM_194252.3Link to Protein Sequence:NP_919228.3Re-query CCDS DB by Nucleotide ID:NM_194252Re-query CCDS DB by Protein ID:NP_919228Link to BLAST:NP_919228.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919228.3 448 Q8NHH1-2 448 100% 0 0

Chromosomal Locations for CCDS 6834.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121989117 121989770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122031723 122031856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122039272 122039368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122092687 122093148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGCGGCGGGGCAGCTCCGAGAGCGAGCTGGCGGCCCGGTGGGAGGCGGAGGCGGTGGCTGCGGCCAAAG
CGGCGGCCAAAGCTGAGGCCGAGGCCACAGCGGAGACGGTGGCGGAACAGGTCCGCGTGGACGCGGGCGC
GGCCGGGGAACCGGAGTGCAAGGCAGGGGAGGAGCAGCCCAAGGTCCTGGCCCCGGCCCCGGCGCAGCCC
AGTGCGGCTGAGGAGGGGAACACCCAGGTCCTTCAGCGGCCGCCGCCCACGCTGCCCCCGTCCAAGCCGA
AGCCGGTGCAGGGCCTCTGCCCGCACGGGAAGCCCCGGGACAAGGGCCGAAGCTGCAAGCGGAGCTCGGG
CCACGGTTCCGGCGAGAACGGCTCCCAGCGGCCGGTCACCGTGGACAGCTCCAAGGCCAGGACCTCCCTG
GATGCCCTGAAGATCAGCATCCGCCAGCTCAAGTGGAAGGAGTTCCCATTTGGCCGGCGCTTGCCTTGTG
ACATCTACTGGCATGGAGTTTCATTTCACGACAATGACATATTCTCCGGTCAAGTGAACAAGTTTCCAGG
CATGACGGAGATGGTGCGTAAAATTACTCTGAGCAGAGCAGTGAGAACCATGCAGAATCTCTTTCCTGAG
GAGTACAACTTCTACCCTCGCTCATGGATTCTGCCTGACGAGTTCCAGCTCTTTGTTGCTCAGGTTCAAA
TGGTGAAAGACGATGACCCCTCCTGGAAGCCCACTTTTATCGTGAAACCTGATGGTGGTTGTCAGGGTGA
TGGAATCTACCTCATTAAAGACCCCAGTGACATCCGCCTGGCAGGGACCCTCCAGAGCAGGCCAGCGGTG
GTCCAGGAGTACATCTGCAAACCTCTCCTTATCGACAAGCTCAAGTTTGATATTCGTCTGTATGTCTTAC
TCAAGTCCTTAGACCCCTTAGAGATTTATATAGCCAAAGACGGACTCTCTAGGTTTTGTACCGAGCCATA
TCAGGAGCCCACCCCCAAAAACCTGCACCGCATCTTTATGCACTTAACCAACTATTCACTGAACATCCAC
AGCGGCAACTTCATCCACTCGGACAGTGCTAGCACTGGCAGCAAAAGGACTTTTTCCAGCATCCTTTGTA
GACTGTCTTCCAAAGGCGTTGACATCAAGAAGGTCTGGTCTGACATCATCTCCGTGGTGATTAAGACGGT
CATCGCGCTGACTCCAGAGCTCAAAGTCTTCTACCAGTCAGACATCCCCACGGGGAGGCCGGGCCCCACG
TGCTTCCAGGTAACCATTGCCAGTTCCCAGCCTGCGTTTCCAGCCTTGACCGGCCTCAAGAGGGCTCTCT
GGCTTCGTGTAGGATGA

Translation (448 aa):
MRRGSSESELAARWEAEAVAAAKAAAKAEAEATAETVAEQVRVDAGAAGEPECKAGEEQPKVLAPAPAQP
SAAEEGNTQVLQRPPPTLPPSKPKPVQGLCPHGKPRDKGRSCKRSSGHGSGENGSQRPVTVDSSKARTSL
DALKISIRQLKWKEFPFGRRLPCDIYWHGVSFHDNDIFSGQVNKFPGMTEMVRKITLSRAVRTMQNLFPE
EYNFYPRSWILPDEFQLFVAQVQMVKDDDPSWKPTFIVKPDGGCQGDGIYLIKDPSDIRLAGTLQSRPAV
VQEYICKPLLIDKLKFDIRLYVLLKSLDPLEIYIAKDGLSRFCTEPYQEPTPKNLHRIFMHLTNYSLNIH
SGNFIHSDSASTGSKRTFSSILCRLSSKGVDIKKVWSDIISVVIKTVIALTPELKVFYQSDIPTGRPGPT
CFQVTIASSQPAFPALTGLKRALWLRVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH