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Report for CCDS6806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6806.1 Public Homo sapiens 9 WHRN 24 110 108 CCDS HistoryNCBI Gene:25861Re-query CCDS DB by CCDS ID:6806.1Re-query CCDS DB by GeneID:25861See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6806.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000362057.4 ENSP00000354623.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000362057.4Link to Ensembl Protein Viewer:ENSP00000354623.3Re-query CCDS DB by Nucleotide ID:ENST00000362057Re-query CCDS DB by Protein ID:ENSP00000354623
Original member Current member NCBI NM_015404.4 NP_056219.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015404.4Link to Protein Sequence:NP_056219.3Re-query CCDS DB by Nucleotide ID:NM_015404Re-query CCDS DB by Protein ID:NP_056219Link to BLAST:NP_056219.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056219.3 907 Q9P202-1 907 100% 0 0

Chromosomal Locations for CCDS 6806.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 114402754 114402936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114403217 114403339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114403896 114404077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114406355 114406892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114407947 114408018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114423314 114423523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114424334 114424546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114424988 114425024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114426211 114426413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114466267 114466392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114478553 114478771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114504184 114504801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2724 nt):
ATGAACGCGCCGCTGGACGGCCTGTCGGTGAGCTCGTCCTCCACCGGCTCGCTGGGCTCGGCGGCCGGGG
CGGGCGGCGGCGGGGGCGCGGGGCTGCGGTTACTGTCTGCCAACGTGCGCCAGCTGCACCAAGCGCTGAC
CGCGCTGCTGAGCGAGGCGGAGCGGGAGCAGTTCACCCACTGCCTGAACGCTTACCACGCGCGCCGCAAC
GTCTTCGACCTGGTGCGCACCCTGCGCGTGCTGCTGGACAGTCCGGTCAAGCGGCGCCTGCTGCCCATGC
TTCGTCTGGTCATCCCGCGCTCCGACCAGCTGCTCTTCGACCAATACACGGCCGAGGGCCTCTACCTGCC
CGCCACCACCCCCTACAGGCAGCCCGCCTGGGGCGGCCCCGACAGCGCGGGGCCAGGGGAGGTGCGCCTG
GTGAGTTTGCGGCGTGCCAAGGCCCACGAGGGCTTGGGCTTCAGCATCCGTGGGGGCTCGGAGCACGGCG
TGGGCATCTACGTGTCTCTGGTGGAACCAGGCTCTCTAGCTGAGAAGGAAGGACTGCGGGTCGGGGACCA
GATTCTGCGCGTCAACGACAAATCCCTGGCCCGGGTGACCCACGCGGAGGCCGTCAAGGCTCTGAAGGGC
TCCAAGAAGCTGGTGCTGTCTGTGTACTCAGCAGGGCGCATCCCTGGGGGCTACGTCACCAACCACATCT
ACACCTGGGTGGACCCGCAGGGCCGCAGCATCTCCCCACCCTCGGGCCTGCCCCAGCCCCACGGTGGTGC
CCTGAGGCAGCAGGAGGGTGACCGGAGGAGCACCCTGCACCTCCTGCAAGGAGGGGATGAGAAAAAGGTG
AACCTGGTGCTGGGGGACGGCCGGTCCCTGGGCCTCACGATCCGTGGGGGAGCTGAGTACGGCCTTGGCA
TTTACATCACTGGCGTGGACCCAGGCTCTGAAGCAGAAGGCAGCGGGCTCAAGGTTGGGGACCAGATTCT
AGAAGTGAATGGGCGGAGCTTTCTCAACATCCTACACGACGAGGCTGTCAGGCTGCTTAAGTCATCTCGG
CACCTCATCCTGACAGTGAAGGACGTCGGGAGGCTGCCCCATGCCCGCACCACTGTGGACGAGACCAAGT
GGATCGCCAGTTCCCGGATCAGGGAGACCATGGCGAACTCGGCAGGGTTTCTTGGCGATCTCACAACAGA
AGGAATAAACAAGCCAGGATTTTACAAGGGCCCAGCCGGCTCCCAGGTGACCCTGAGCAGCCTGGGGAAC
CAGACACGAGTGCTGCTGGAGGAGCAGGCTCGGCACCTGCTGAACGAGCAGGAACACGCCACCATGGCCT
ACTACCTGGATGAGTACCGTGGTGGCAGCGTCTCTGTGGAGGCCCTCGTCATGGCCCTGTTCAAGCTGCT
CAACACCCACGCCAAGTTCTCACTCCTCTCTGAGGTGAGAGGCACCATTTCCCCGCAAGACCTAGAACGC
TTCGACCACCTGGTGCTGAGGCGTGAGATTGAGTCCATGAAGGCGCGGCAGCCCCCAGGCCCCGGGGCTG
GGGACACCTACTCCATGGTCTCCTACAGTGACACGGGTTCATCCACAGGCAGCCACGGCACCTCCACCAC
CGTCAGCTCGGCCAGGAACACTCTGGACCTGGAGGAAACTGGCGAGGCTGTCCAGGGCAATATCAACGCC
CTCCCAGATGTGTCCGTGGATGATGTCAGATCCACCTCCCAGGGGCTGTCAAGCTTCAAGCCACTGCCTC
GCCCACCACCTCTGGCCCAAGGCAACGACCTCCCACTAGGCCAGCCAAGGAAGCTGGGGAGAGAGGACCT
CCAGCCACCTTCCTCCATGCCTTCCTGCTCGGGCACTGTCTTCTCGGCTCCACAGAACCGCAGCCCGCCA
GCGGGCACCGCACCCACCCCAGGGACCTCCTCTGCACAGGACTTGCCCTCTTCCCCCATCTATGCCTCCG
TCTCCCCTGCCAACCCCAGCTCCAAGAGGCCGCTGGACGCCCATCTGGCCCTGGTCAACCAACACCCCAT
CGGCCCCTTCCCACGGGTCCAGTCACCCCCGCACCTGAAAAGCCCCTCTGCAGAGGCCACAGTGGCTGGG
GGCTGCCTTCTGCCCCCATCACCCTCTGGCCACCCAGACCAGACAGGCACAAACCAGCACTTTGTCATGG
TGGAGGTCCACCGCCCCGACAGCGAGCCAGACGTCAATGAAGTGAGGGCGCTGCCCCAGACGCGCACAGC
CTCTACGCTCTCCCAGCTCTCGGACAGCGGGCAGACTCTAAGCGAGGACAGTGGTGTGGATGCTGGCGAG
GCAGAGGCCAGCGCCCCAGGCCGAGGAAGGCAGTCGGTGTCCACCAAGAGCAGGAGTAGCAAGGAGCTGC
CTCGGAACGAGAGGCCCACAGATGGGGCCAACAAACCGCCTGGACTTCTGGAGCCCACGTCCACTCTGGT
CCGTGTGAAGAAAAGTGCGGCCACCCTGGGCATCGCCATCGAGGGTGGCGCCAACACCCGCCAGCCCCTG
CCTAGGATTGTCACTATTCAGAGAGGCGGCTCAGCTCACAACTGTGGGCAGCTCAAGGTGGGCCACGTGA
TTCTGGAAGTGAATGGGCTGACGCTTCGGGGCAAGGAGCACCGGGAGGCCGCCCGCATTATCGCCGAGGC
CTTCAAGACTAAGGACCGTGACTACATTGACTTTCTGGTCACTGAGTTCAATGTGATGCTCTAG

Translation (907 aa):
MNAPLDGLSVSSSSTGSLGSAAGAGGGGGAGLRLLSANVRQLHQALTALLSEAEREQFTHCLNAYHARRN
VFDLVRTLRVLLDSPVKRRLLPMLRLVIPRSDQLLFDQYTAEGLYLPATTPYRQPAWGGPDSAGPGEVRL
VSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKG
SKKLVLSVYSAGRIPGGYVTNHIYTWVDPQGRSISPPSGLPQPHGGALRQQEGDRRSTLHLLQGGDEKKV
NLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSR
HLILTVKDVGRLPHARTTVDETKWIASSRIRETMANSAGFLGDLTTEGINKPGFYKGPAGSQVTLSSLGN
QTRVLLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKFSLLSEVRGTISPQDLER
FDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHGTSTTVSSARNTLDLEETGEAVQGNINA
LPDVSVDDVRSTSQGLSSFKPLPRPPPLAQGNDLPLGQPRKLGREDLQPPSSMPSCSGTVFSAPQNRSPP
AGTAPTPGTSSAQDLPSSPIYASVSPANPSSKRPLDAHLALVNQHPIGPFPRVQSPPHLKSPSAEATVAG
GCLLPPSPSGHPDQTGTNQHFVMVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGE
AEASAPGRGRQSVSTKSRSSKELPRNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQPL
PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNVML


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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