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Report for CCDS6727.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6727.2 Public Homo sapiens 9 TSTD2 24 110 108 CCDS HistoryNCBI Gene:158427Re-query CCDS DB by CCDS ID:6727.2Re-query CCDS DB by GeneID:158427See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6727.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341170.5 ENSP00000342499.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341170.5Link to Ensembl Protein Viewer:ENSP00000342499.4Re-query CCDS DB by Nucleotide ID:ENST00000341170Re-query CCDS DB by Protein ID:ENSP00000342499
Original member Current member NCBI NM_139246.5 NP_640339.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139246.5Link to Protein Sequence:NP_640339.4Re-query CCDS DB by Nucleotide ID:NM_139246Re-query CCDS DB by Protein ID:NP_640339Link to BLAST:NP_640339.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_640339.4 516 Q5T7W7-1 516 100% 0 0

Chromosomal Locations for CCDS 6727.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 97602469 97602767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97604727 97604865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97605483 97605641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97606143 97606261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97610346 97610451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97611574 97611699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97617757 97617877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97625681 97625997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97627398 97627562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGCCTTCTTCCACTTCACCAGACCAAGGAGATGACCTGGAGAACTGCATTTTAAGATTTTCTGACCTGG
ATTTAAAAGATATGAGTCTTATTAATCCCAGCAGCAGTCTTAAAGCAGAATTAGATGGCAGTACAAAAAA
GAAATACTCGTTTGCAAAGAAAAAGGCCTTTGCCCTTTTTGTCAAAACCAAAGAAGTTCCAACAAAAAGG
AGTTTTGAATGTAAAGAAAAATTGTGGAAATGCTGTCGGCAGCTATTCACAGACCAAACCAGCATCCATA
GACATGTGGCAACACAACATGCTGATGAAATTTATCACCAGACAGCTTCTATTTTAAAGCAACTGGCTGT
GACATTGAGCACCTCAAAGAGTCTTTCGTCTGCAGATGAAAAGAACCCTTTAAAAGAGTGCCTTCCACAT
AGCCATGACGTGTCTGCTTGGCTCCCTGATATAAGCTGCTTTAACCCTGATGAGCTGATAAGTGGCCAGG
GCAGTGAAGAAGGGGAGGTGCTCCTTTATTACTGCTACCATGACCTGGAGGATCCCCAATGGATCTGTGC
CTGGCAGACAGCTCTGTGTCAGCACCTGCACCTCACAGGCAAGATTCGAATTGCTGCAGAAGGAATCAAT
GGGACAGTTGGTGGAAGCAAATTGGCTACCAGACTTTATGTGGAAGTCATGCTTTCCTTCCCATTGTTTA
AGGATGACCTGTGTAAAGATGATTTTAAGACCAGCAAAGGAGGAGCTCACTGTTTTCCAGAATTGCGTGT
TGGTGTATTTGAAGAAATCGTGCCCATGGGGATCAGCCCCAAAAAGATCTCCTACAAGAAGCCTGGAATC
CATTTATCCCCAGGTGAATTTCATAAAGAAGTAGAAAAGTTTTTATCTCAGGCAAATCAAGAACAAAGTG
ATACTATCCTTCTTGATTGCAGAAACTTCTATGAAAGCAAAATAGGACGATTCCAAGGCTGCTTAGCCCC
AGACATCAGGAAATTCAGTTACTTCCCTAGCTACGTTGACAAAAATCTAGAACTTTTCAGAGAGAAGAGA
GTGCTGATGTACTGTACCGGGGGCATCCGCTGTGAGCGGGGTTCAGCCTACCTCAAAGCCAAGGGAGTGT
GCAAGGAGGTGTTCCAGCTCAAGGGTGGCATCCACAAGTACCTGGAAGAGTTTCCTGATGGCTTTTACAA
AGGGAAGTTGTTTGTTTTTGATGAACGCTATGCTCTGTCCTACAACAGTGATGTGGTGTCAGAGTGTTCA
TACTGTGGAGCCCGCTGGGACCAGTATAAACTCTGCTCTACTCCCCAGTGCCGCCAGCTCGTTTTGACCT
GCCCTGCCTGTCAAGGACAAGGATTCACAGCCTGTTGTGTCACATGTCAAGACAAGGGGAGCAGGAAAGT
TTCAGGCCCTATGCAAGACAGCTTTAAAGAGGAATGCGAGTGCACAGCCCGACGGCCACGCATACCTAGG
GAACTCTTGCAGCATGTGCGACAGCCTGTGAGCCCAGAGCCAGGGCCTGATGCTGATGAGGATGGGCCAG
TGCTTATGTGA

Translation (516 aa):
MPSSTSPDQGDDLENCILRFSDLDLKDMSLINPSSSLKAELDGSTKKKYSFAKKKAFALFVKTKEVPTKR
SFECKEKLWKCCRQLFTDQTSIHRHVATQHADEIYHQTASILKQLAVTLSTSKSLSSADEKNPLKECLPH
SHDVSAWLPDISCFNPDELISGQGSEEGEVLLYYCYHDLEDPQWICAWQTALCQHLHLTGKIRIAAEGIN
GTVGGSKLATRLYVEVMLSFPLFKDDLCKDDFKTSKGGAHCFPELRVGVFEEIVPMGISPKKISYKKPGI
HLSPGEFHKEVEKFLSQANQEQSDTILLDCRNFYESKIGRFQGCLAPDIRKFSYFPSYVDKNLELFREKR
VLMYCTGGIRCERGSAYLKAKGVCKEVFQLKGGIHKYLEEFPDGFYKGKLFVFDERYALSYNSDVVSECS
YCGARWDQYKLCSTPQCRQLVLTCPACQGQGFTACCVTCQDKGSRKVSGPMQDSFKEECECTARRPRIPR
ELLQHVRQPVSPEPGPDADEDGPVLM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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