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Report for CCDS6719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6719.1 Public Homo sapiens 9 HABP4 24 110 108 CCDS HistoryNCBI Gene:22927Re-query CCDS DB by CCDS ID:6719.1Re-query CCDS DB by GeneID:22927See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6719.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375249.5 ENSP00000364398.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375249.5Link to Ensembl Protein Viewer:ENSP00000364398.4Re-query CCDS DB by Nucleotide ID:ENST00000375249Re-query CCDS DB by Protein ID:ENSP00000364398
Original member Current member NCBI NM_014282.4 NP_055097.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014282.4Link to Protein Sequence:NP_055097.2Re-query CCDS DB by Nucleotide ID:NM_014282Re-query CCDS DB by Protein ID:NP_055097Link to BLAST:NP_055097.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055097.2 413 Q5JVS0-1 413 100% 0 0

Chromosomal Locations for CCDS 6719.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96450280 96450628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96458379 96458541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96465337 96465498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96465710 96465778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96471011 96471094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96484462 96484633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96488089 96488274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96489982 96490038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGAAGGGCGCTCTGGGGAGTCCCGTGGCTGCCGCTGGCGCCGCGATGCAGGAGAGTTTCGGCTGCGTGG
TGGCCAACCGCTTCCATCAGCTGCTGGACGACGAGTCGGACCCGTTCGACATCCTGCGCGAGGCCGAGCG
CCGGCGCCAGCAGCAGCTGCAGCGCAAGAGGCGCGACGAGGCGGCGGCGGCGGCCGGGGCCGGTCCCCGC
GGCGGCAGGAGCCCAGCCGGGGCCTCGGGCCACAGAGCCGGCGCGGGCGGCCGGAGGGAGTCGCAGAAGG
AGCGCAAGAGCCTCCCGGCGCCCGTCGCTCAGCGGCCCGATAGCCCCGGGGGCGGCCTGCAGGCGCCGGG
CCAGAAGCGGACTCCTAGAAGAGGGGAGCAGCAAGGATGGAATGACAGCCGTGGGCCGGAGGGGATGCTC
GAAAGAGCTGAGCGGAGATCCTACAGGGAATACCGACCCTATGAGACAGAGAGGCAGGCAGACTTCACAG
CTGAGAAGTTTCCAGATGAAAAACCAGGTGATAGGTTTGATCGAGACAGACCGTTGAGAGGACGTGGAGG
CCCGAGAGGGGGTATGCGCGGCAGAGGCAGAGGTGGCCCTGGGAACAGAGTTTTTGACGCTTTTGACCAG
AGAGGAAAGCGAGAATTTGAAAGATATGGTGGGAATGACAAAATAGCAGTCAGAACTGAAGACAACATGG
GTGGATGTGGAGTTCGAACCTGGGGATCGGGTAAAGATACCAGTGATGTGGAGCCAACTGCACCGATGGA
GGAACCCACAGTGGTGGAGGAGTCCCAGGGCACCCCGGAAGAGGAGTCTCCAGCCAAAGTTCCTGAGTTG
GAGGTAGAAGAAGAAACCCAAGTTCAAGAGATGACTTTAGATGAGTGGAAAAATCTTCAAGAACAGACCA
GACCAAAGCCTGAGTTTAACATCCGGAAACCAGAATCCACTGTTCCTTCCAAAGCCGTGGTGATTCACAA
GTCAAAATACAGAGATGATATGGTAAAAGATGACTATGAGGACGATTCCCATGTTTTCCGGAAACCCGCC
AATGACATCACATCCCAGCTGGAGATTAATTTTGGTAACCTCCCTCGTCCTGGGCGTGGAGCCAGAGGAG
GCACCCGGGGAGGCCGGGGAAGGATCAGGAGGGCAGAGAACTATGGACCCAGAGCAGAAGTGGTGATGCA
AGATGTTGCCCCCAACCCAGATGACCCGGAAGATTTCCCTGCGCTGTCTTGA

Translation (413 aa):
MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDEAAAAAGAGPR
GGRSPAGASGHRAGAGGRRESQKERKSLPAPVAQRPDSPGGGLQAPGQKRTPRRGEQQGWNDSRGPEGML
ERAERRSYREYRPYETERQADFTAEKFPDEKPGDRFDRDRPLRGRGGPRGGMRGRGRGGPGNRVFDAFDQ
RGKREFERYGGNDKIAVRTEDNMGGCGVRTWGSGKDTSDVEPTAPMEEPTVVEESQGTPEEESPAKVPEL
EVEEETQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVPSKAVVIHKSKYRDDMVKDDYEDDSHVFRKPA
NDITSQLEINFGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVAPNPDDPEDFPALS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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