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Report for CCDS6708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6708.1 Public Homo sapiens 9 PTPDC1 24 110 108 CCDS HistoryNCBI Gene:138639Re-query CCDS DB by CCDS ID:6708.1Re-query CCDS DB by GeneID:138639See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6708.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288976.3 ENSP00000288976.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000288976.3Link to Ensembl Protein Viewer:ENSP00000288976.3Re-query CCDS DB by Nucleotide ID:ENST00000288976Re-query CCDS DB by Protein ID:ENSP00000288976
Original member Current member NCBI NM_152422.4 NP_689635.3 Accepted alive Link to Nucleotide Sequence:NM_152422.4Link to Protein Sequence:NP_689635.3Re-query CCDS DB by Nucleotide ID:NM_152422Re-query CCDS DB by Protein ID:NP_689635Link to BLAST:NP_689635.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689635.3 806 A2A3K4-2 806 100% 0 0

Chromosomal Locations for CCDS 6708.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 94084531 94084768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94085251 94085422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94087831 94087911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94088145 94088263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94095317 94095454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94097321 94098579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94101566 94101751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94104275 94104385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94107828 94107944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2421 nt):
ATGCAGGTGCAGGATGCAACCAGGCGGCCCTCAGCCGTGCGCTTCCTCAGCTCCTTTCTCCAGGGCCGCC
GGCACTCCACCTCAGACCCAGTACTGCGGCTGCAGCAGGCCCGGCGGGGCTCTGGCTTGGGCTCCGGCTC
TGCCACGAAGCTGCTGTCCTCGTCCTCTCTCCAGGTGATGGTGGCTGTTTCCTCAGTCAGCCATGCAGAG
GGAAACCCAACTTTCCCCGAAAGAAAAAGAAATTTAGAACGTCCAACACCAAAGTACACAAAAGTAGGGG
AGCGTTTACGGCATGTCATTCCTGGACACATGGCATGTTCCATGGCGTGTGGCGGTAGAGCTTGCAAGTA
TGAGAACCCAGCCCGCTGGAGTGAGCAGGAGCAAGCCATTAAGGGGGTTTACTCATCCTGGGTCACTGAT
AATATACTGGCCATGGCCCGCCCATCCTCTGAGCTCCTGGAGAAGTACCACATCATTGATCAGTTCCTCA
GCCATGGCATAAAAACAATAATCAACCTCCAGCGCCCTGGTGAGCATGCTAGCTGTGGGAACCCTCTGGA
ACAAGAAAGTGGCTTCACATACCTTCCTGAGGCTTTCATGGAGGCTGGCATTTACTTCTACAATTTCGGA
TGGAAGGATTATGGTGTAGCGTCTCTTACTACTATCCTAGATATGGTGAAGGTGATGACATTTGCCTTAC
AGGAAGGAAAAGTAGCTATCCATTGTCATGCAGGGCTTGGTCGAACAGGTGTTTTAATAGCCTGTTACTT
AGTTTTTGCAACGAGAATGACTGCTGACCAAGCAATTATATTTGTGCGGGCAAAGCGACCCAATTCCATA
CAAACCAGAGGACAGCTCCTCTGTGTAAGGGAATTTACTCAGTTTCTAACTCCTCTCCGCAATATATTCT
CTTGCTGTGATCCCAAAGCACATGCTGTCACCTTACCTCAATATCTAATTCGCCAGCGTCATCTGCTTCA
TGGTTATGAGGCACGACTTCTGAAACACGTGCCAAAAATTATCCACCTAGTTTGCAAATTGCTGCTGGAC
TTAGCGGAGAACAGGCCAGTGATGATGAAGGATGTGTCCGAAGGACCTGGTCTCTCTGCTGAAATAGAAA
AGACAATGTCTGAGATGGTCACCATGCAGCTGGATAAAGAGTTACTGAGGCATGACAGTGATGTGTCCAA
CCCGCCTAACCCCACTGCAGTGGCAGCAGATTTTGACAATCGAGGCATGATTTTCTCCAATGAGCAACAG
TTTGACCCTCTTTGGAAAAGGCGGAATGTTGAGTGCCTTCAACCCCTGACTCATCTGAAAAGGCGGCTCA
GCTACAGTGACTCAGATTTAAAGAGGGCCGAGAACCTCCTGGAGCAAGGGGAGACTCCACAGACAGTGCC
TGCCCAGATCTTGGTTGGCCACAAGCCCAGGCAGCAGAAGCTCATAAGCCATTGTTACATCCCACAGTCT
CCAGAACCAGACTTACACAAGGAAGCCTTGGTTCGCAGCACACTTTCTTTCTGGAGTCAGTCAAAGTTTG
GAGGCCTGGAAGGACTCAAAGATAATGGGTCACCAATTTTCCATGGAAGGATCATTCCAAAGGAAGCACA
GCAGAGTGGAGCTTTCTCTGCAGATGTTTCAGGCTCACACAGCCCTGGGGAGCCAGTTTCACCCAGCTTT
GCAAATGTCCATAAGGATCCAAACCCTGCTCACCAGCAAGTGTCTCACTGTCAGTGTAAAACTCATGGTG
TTGGGAGCCCTGGCTCTGTCAGGCAGAACAGCAGGACACCCCGAAGCCCTCTGGACTGTGGCTCCAGTCC
CAAAGCACAGTTCTTGGTTGAACATGAAACCCAGGACAGTAAAGATCTGTCTGAAGCAGCTTCACACTCT
GCATTACAGTCTGAATTGAGTGCTGAGGCAAGAAGAATACTGGCGGCCAAAGCCCTAGCAAATTTAAATG
AATCTGTAGAAAAGGAGGAACTAAAAAGGAAGGTAGAAATGTGGCAGAAAGAGCTTAATTCCCGAGATGG
AGCTTGGGAAAGAATATGTGGCGAGAGGGACCCTTTCATCCTATGCAGCTTGATGTGGTCTTGGGTGGAG
CAACTGAAGGAGCCTGTAATCACCAAAGAGGATGTGGACATGTTGGTTGACAGGCGAGCAGATGCCGCAG
AAGCACTTTTTTTATTAGAGAAGGGACAGCACCAGACTATTCTCTGCGTGTTGCACTGCATAGTGAACCT
GCAGACAATTCCCGTGGATGTGGAGGAAGCTTTCCTTGCCCATGCCATTAAGGCATTCACTAAGGTTAAT
TTTGATTCTGAAAATGGACCAACAGTTTACAACACCCTGAAGAAAATATTTAAGCACACGCTGGAAGAAA
AAAGAAAAATGACAAAAGATGGCCCTAAGCCTGGCCTCTAG

Translation (806 aa):
MQVQDATRRPSAVRFLSSFLQGRRHSTSDPVLRLQQARRGSGLGSGSATKLLSSSSLQVMVAVSSVSHAE
GNPTFPERKRNLERPTPKYTKVGERLRHVIPGHMACSMACGGRACKYENPARWSEQEQAIKGVYSSWVTD
NILAMARPSSELLEKYHIIDQFLSHGIKTIINLQRPGEHASCGNPLEQESGFTYLPEAFMEAGIYFYNFG
WKDYGVASLTTILDMVKVMTFALQEGKVAIHCHAGLGRTGVLIACYLVFATRMTADQAIIFVRAKRPNSI
QTRGQLLCVREFTQFLTPLRNIFSCCDPKAHAVTLPQYLIRQRHLLHGYEARLLKHVPKIIHLVCKLLLD
LAENRPVMMKDVSEGPGLSAEIEKTMSEMVTMQLDKELLRHDSDVSNPPNPTAVAADFDNRGMIFSNEQQ
FDPLWKRRNVECLQPLTHLKRRLSYSDSDLKRAENLLEQGETPQTVPAQILVGHKPRQQKLISHCYIPQS
PEPDLHKEALVRSTLSFWSQSKFGGLEGLKDNGSPIFHGRIIPKEAQQSGAFSADVSGSHSPGEPVSPSF
ANVHKDPNPAHQQVSHCQCKTHGVGSPGSVRQNSRTPRSPLDCGSSPKAQFLVEHETQDSKDLSEAASHS
ALQSELSAEARRILAAKALANLNESVEKEELKRKVEMWQKELNSRDGAWERICGERDPFILCSLMWSWVE
QLKEPVITKEDVDMLVDRRADAAEALFLLEKGQHQTILCVLHCIVNLQTIPVDVEEAFLAHAIKAFTKVN
FDSENGPTVYNTLKKIFKHTLEEKRKMTKDGPKPGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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