NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6681.1 Public Homo sapiens 9 SHC3 24 110 108 CCDS HistoryNCBI Gene:53358Re-query CCDS DB by CCDS ID:6681.1Re-query CCDS DB by GeneID:53358See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6681.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375835.9 ENSP00000364995.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375835.9Link to Ensembl Protein Viewer:ENSP00000364995.4Re-query CCDS DB by Nucleotide ID:ENST00000375835Re-query CCDS DB by Protein ID:ENSP00000364995
Original member Current member NCBI NM_016848.6 NP_058544.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016848.6Link to Protein Sequence:NP_058544.3Re-query CCDS DB by Nucleotide ID:NM_016848Re-query CCDS DB by Protein ID:NP_058544Link to BLAST:NP_058544.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058544.3 594 Q92529-1 594 100% 0 0

Chromosomal Locations for CCDS 6681.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 89013447 89013575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89037993 89038288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89042026 89042184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89045746 89045833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89046844 89046994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89052037 89052163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89065529 89065580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89071199 89071252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89075109 89075228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89077840 89077903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89112556 89112626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89177987 89178460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGCTTCCACGCACCAAGTATAACCGCTTCAGGAATGACTCGGTGACATCGGTCGATGACCTTCTCCACA
GCCTGTCGGTGAGCGGCGGCGGAGGCAAGGTTTCGGCGGCGCGCGCGACCCCGGCGGCGGCTCCCTACTT
GGTGTCCGGCGAGGCGCTGCGCAAGGCGCCCGACGATGGGCCCGGCAGCCTGGGCCACCTGCTCCACAAG
GTGTCCCACCTGAAACTCTCCAGCTCGGGCCTCCGCGGCCTGTCGTCGGCCGCCCGGGAGCGGGCGGGCG
CGCGGCTCTCGGGCAGCTGCAGCGCGCCCAGCCTGGCCGCCCCGGACGGCAGTGCGCCCTCGGCGCCCCG
CGCCCCGGCCATGAGCGCCGCCAGGAAGGGCCGGCCCGGCGACGAGCCGCTGCCCAGGCCCCCTCGGGGG
GCGCCGCACGCCAGCGACCAGGTGCTGGGGCCCGGAGTCACCTACGTGGTCAAGTACTTGGGGTGCATTG
AAGTTCTGCGCTCAATGAGGTCTCTTGACTTCAGTACAAGAACACAAATTACCAGGGAAGCCATCAGCCG
CGTCTGTGAAGCTGTGCCTGGTGCGAAGGGAGCCTTCAAGAAGAGAAAGCCTCCAAGCAAAATGCTGTCC
AGCATCTTGGGAAAGAGCAACCTCCAGTTTGCGGGAATGAGCATCTCTCTGACCATCTCCACGGCCAGTC
TGAACCTGCGAACTCCGGACTCCAAACAGATCATAGCGAATCACCACATGCGGTCCATCTCCTTCGCCTC
TGGGGGAGACCCGGACACAACTGACTATGTTGCATATGTGGCTAAGGACCCTGTTAATCGCAGAGCTTGT
CACATTTTGGAATGCTGTGATGGGCTGGCCCAGGATGTCATCGGCTCCATCGGACAAGCCTTTGAGCTCC
GGTTTAAGCAATATTTACAGTGTCCTACCAAGATTCCCGCTCTCCATGATCGAATGCAGAGTCTGGATGA
GCCATGGACGGAAGAGGAGGGAGATGGCTCAGACCACCCATACTACAACAGCATCCCAAGCAAGATGCCT
CCTCCAGGGGGCTTTCTTGATACTAGACTGAAACCCAGACCCCATGCTCCTGACACAGCCCAGTTTGCAG
GAAAAGAGCAGACTTATTACCAGGGAAGACACTTAGGAGACACTTTTGGCGAAGACTGGCAGCAAACACC
TTTAAGGCAAGGGTCCTCGGACATCTACAGCACGCCAGAAGGGAAACTGCACGTGGCCCCCACGGGAGAA
GCACCCACCTACGTCAACACTCAGCAGATCCCACCACAGGCCTGGCCGGCTGCGGTCAGCAGTGCTGAGA
GCAGCCCAAGGAAAGACCTCTTTGACATGAAACCTTTTGAAGATGCTCTCAAGAACCAGCCCTTGGGGCC
CGTGTTAAGCAAGGCAGCCTCCGTGGAGTGCATCAGCCCTGTGTCACCTAGAGCCCCAGATGCCAAGATG
CTGGAGGAACTGCAAGCCGAGACTTGGTACCAAGGAGAGATGAGCAGGAAGGAGGCAGAGGGGCTGCTGG
AGAAAGACGGAGACTTCCTGGTCAGGAAGAGCACCACCAACCCGGGCTCCTTTGTCCTCACGGGCATGCA
CAATGGCCAGGCCAAGCACCTGCTGCTCGTGGACCCAGAAGGCACGATCCGGACAAAGGACAGAGTCTTT
GACAGTATCAGCCACCTCATCAACCACCACCTAGAAAGCAGCCTGCCCATTGTCTCTGCAGGGAGTGAGC
TGTGTCTCCAGCAGCCAGTGGAGAGGAAGCAGTGA

Translation (594 aa):
MLPRTKYNRFRNDSVTSVDDLLHSLSVSGGGGKVSAARATPAAAPYLVSGEALRKAPDDGPGSLGHLLHK
VSHLKLSSSGLRGLSSAARERAGARLSGSCSAPSLAAPDGSAPSAPRAPAMSAARKGRPGDEPLPRPPRG
APHASDQVLGPGVTYVVKYLGCIEVLRSMRSLDFSTRTQITREAISRVCEAVPGAKGAFKKRKPPSKMLS
SILGKSNLQFAGMSISLTISTASLNLRTPDSKQIIANHHMRSISFASGGDPDTTDYVAYVAKDPVNRRAC
HILECCDGLAQDVIGSIGQAFELRFKQYLQCPTKIPALHDRMQSLDEPWTEEEGDGSDHPYYNSIPSKMP
PPGGFLDTRLKPRPHAPDTAQFAGKEQTYYQGRHLGDTFGEDWQQTPLRQGSSDIYSTPEGKLHVAPTGE
APTYVNTQQIPPQAWPAAVSSAESSPRKDLFDMKPFEDALKNQPLGPVLSKAASVECISPVSPRAPDAKM
LEELQAETWYQGEMSRKEAEGLLEKDGDFLVRKSTTNPGSFVLTGMHNGQAKHLLLVDPEGTIRTKDRVF
DSISHLINHHLESSLPIVSAGSELCLQQPVERKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH