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Report for CCDS65461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65461.1 Public Homo sapiens 1 THEMIS2 24 110 108 CCDS HistoryNCBI Gene:9473Re-query CCDS DB by CCDS ID:65461.1Re-query CCDS DB by GeneID:9473See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 65461.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328928.11 ENSP00000329862.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328928.11Link to Ensembl Protein Viewer:ENSP00000329862.7Re-query CCDS DB by Nucleotide ID:ENST00000328928Re-query CCDS DB by Protein ID:ENSP00000329862
Original member Current member NCBI NM_001286113.2 NP_001273042.1 Accepted alive Link to Nucleotide Sequence:NM_001286113.2Link to Protein Sequence:NP_001273042.1Re-query CCDS DB by Nucleotide ID:NM_001286113Re-query CCDS DB by Protein ID:NP_001273042Link to BLAST:NP_001273042.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273042.1 514 Q5TEJ8-5 514 100% 0 0

Chromosomal Locations for CCDS 65461.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27872572 27872665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27876588 27876728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27879644 27880054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27881971 27882125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27882513 27883043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27885295 27885451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27885867 27885922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGAGCCGGTGCCGCTGCAGGACTTCGTGCGCGCCTTGGACCCCGCCTCCCTCCCGCGCGTGCTGCGGG
TCTGCTCGGGGGTCTACTTCGAGGGCTCCATCTATGAGATCTCTGGGAATGAGTGCTGCCTCTCCACGGG
GGACCTGATCAAGGTCACCCAGGTCCGCCTCCAGAAGGTGGTCTGTGAGAACCCGAAGACCAGCCAGACC
ATGGAGCTCGCCCCCAACTTCCAGGGCTACTTCACCCCCCTCAACACCCCACAGAGCTATGAAACCCTGG
AGGAGCTGGTCTCTGCCACAACTCAGAGCTCCAAGCAGCTGCCCACTTGCTTCATGTCGACCCACAGGAT
TGTCACAGAGGGCAGGGTGGTGACTGAGGACCAGCTCCTCATGCTTGAGGCTGTGGTGATGCACCTCGGG
ATCCGCTCTGCCCGCTGTGTCCTGGGCATGGAGGGTCAGCAGGTCATCCTGCACCTGCCCCTATCCCAGA
AGGGGCCCTTCTGGACATGGGAGCCTAGTGCCCCTCGAACTCTGCTCCAGGTCCTACAGGATCCAGCCCT
GAAAGACCTCGTCCTCACCTGCCCCACCCTGCCCTGGCATTCCCTGATCCTGCGGCCCCAGTATGAGATC
CAAGCCATCATGCACATGCGCAGGACCATTGTCAAGATCCCTTCTACCCTGGAGGTCGACGTGGAGGACG
TCACCGCCTCCTCCCGGCACGTCCACTTTATCAAACCGCTGCTGCTGAGCGAGGTCCTGGCCTGGGAAGG
CCCTTTCCCCCTGTCCATGGAGATCCTGGAGCGGCTGAGTGACCAGGCTGGGGAGGATGAGGAGGAAGAG
TGCAAAGAGGAGGCAGAGAGCCCAGAGCGGGTCCTGCTGCCCTTCCACTTCCCTGGCAGTTTCGTGGAGG
AGATGAGTGACAGCCGGCGCTACAGCCTGGCAGATCTGACTGCCCAGTTTTCACTGCCTTGTGAGGTCAA
GGTGGTGGCCAAGGACACCAGCCACCCCACTGACCCTCTGACCTCCTTCCTGGGCCTGCGGCTGGAGGAG
AAGATCACAGAGCCATTCTTGGTGGTGAGCCTAGACTCTGAGCCTGGGATGTGCTTTGAGATCCCTCCCC
GGTGGCTGGACCTGACTGTTGTGAAGGCCAAGGGGCAGCCAGACTTGCCAGAGGGGTCTCTCCCCATAGC
CACAGTGGAGGAGCTGACAGACACCTTCTATTATCGTCTTCGGAAGTTACCAGCCTGTGAGATCCAAGCC
CCCCCACCCAGGCCCCCTAAAAATCAGGGCCTCAGCAAGCAGAGGAGACACAGCAGTGAGGGAGGCGTCA
AGTCTTCTCAAGTCTTAGGATTGCAGCAACACGCTCGGCTGCCCAAACCCAAGGCGAAGACCTTGCCAGA
GTTCATCAAGGATGGCTCCAGTACGTACAGCAAGATTCCTGCCCACAGGAAGGGCCACAGGCCCGCTAAG
CCCCAAAGGCAGGATCTAGATGATGATGAACATGATTATGAAGAAATACTTGAGCAATTTCAGAAAACCA
TCTAA

Translation (514 aa):
MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKVVCENPKTSQT
MELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTEGRVVTEDQLLMLEAVVMHLG
IRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQVLQDPALKDLVLTCPTLPWHSLILRPQYEI
QAIMHMRRTIVKIPSTLEVDVEDVTASSRHVHFIKPLLLSEVLAWEGPFPLSMEILERLSDQAGEDEEEE
CKEEAESPERVLLPFHFPGSFVEEMSDSRRYSLADLTAQFSLPCEVKVVAKDTSHPTDPLTSFLGLRLEE
KITEPFLVVSLDSEPGMCFEIPPRWLDLTVVKAKGQPDLPEGSLPIATVEELTDTFYYRLRKLPACEIQA
PPPRPPKNQGLSKQRRHSSEGGVKSSQVLGLQQHARLPKPKAKTLPEFIKDGSSTYSKIPAHRKGHRPAK
PQRQDLDDDEHDYEEILEQFQKTI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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