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Report for CCDS65184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65184.1 Public Homo sapiens 9 OLFM1 24 110 108 CCDS HistoryNCBI Gene:10439Re-query CCDS DB by CCDS ID:65184.1Re-query CCDS DB by GeneID:10439See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 65184.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371793.8 ENSP00000360858.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371793.8Link to Ensembl Protein Viewer:ENSP00000360858.3Re-query CCDS DB by Nucleotide ID:ENST00000371793Re-query CCDS DB by Protein ID:ENSP00000360858
Original member Current member NCBI NM_001282611.2 NP_001269540.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282611.2Link to Protein Sequence:NP_001269540.1Re-query CCDS DB by Nucleotide ID:NM_001282611Re-query CCDS DB by Protein ID:NP_001269540Link to BLAST:NP_001269540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269540.1 485 Q99784-1 485 100% 0 0

Chromosomal Locations for CCDS 65184.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 135087990 135088139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135090195 135090344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135095864 135096019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135098286 135098505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135106749 135106855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135119504 135120178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGTCGGTGCCGCTGCTCAAGATCGGGGTCGTGCTGAGCACCATGGCCATGATCACTAACTGGATGTCCC
AGACGCTGCCCTCGCTGGTGGGCCTCAACACCACCAAGCTCTCGGCGGCCGGCGGCGGGACGCTGGACCG
CAGCACCGGCGTGCTGCCCACCAACCCTGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGCGAG
GGCAGGTGTATCTGCACAGTGGTCGCTCCACAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGC
TGAGGCAGCTACTGGAGAAGGTGCAGAACATGTCTCAATCCATAGAGGTCTTGGACAGGCGGACCCAGAG
AGACTTGCAGTACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCCAAGTTCAAACAGGTGGAG
GAGAGTCATAAGCAACACCTGGCCAGGCAGTTTAAGGCGATAAAAGCGAAAATGGATGAACTTAGGCCTT
TGATACCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAA
TCTGACGTCAGTGCTTAACGAGCTGCAAGAGGAAATTGGCGCCTATGACTACGATGAACTTCAGAGCAGA
GTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAGCTTGCGGGAAGTTGACGGGCATCA
GTGACCCCGTGACTGTCAAGACCTCCGGCTCGAGGTTCGGATCCTGGATGACAGACCCTCTCGCCCCTGA
AGGCGATAACCGGGTGTGGTACATGGACGGCTATCACAACAACCGCTTCGTACGTGAGTACAAGTCCATG
GTTGACTTCATGAACACGGACAATTTCACCTCCCACCGTCTCCCCCACCCCTGGTCGGGCACGGGGCAGG
TGGTCTACAACGGTTCTATCTACTTCAACAAGTTCCAGAGCCACATCATCATCAGGTTTGACCTGAAGAC
AGAGACCATCCTCAAGACCCGCAGCCTGGACTATGCCGGTTACAACAACATGTACCACTACGCCTGGGGT
GGCCACTCGGACATCGACCTCATGGTGGACGAGAGCGGGCTGTGGGCCGTGTACGCCACCAACCAGAACG
CTGGCAACATCGTGGTCAGTAGGCTGGACCCCGTGTCCCTGCAGACCCTGCAGACCTGGAACACGAGCTA
CCCCAAGCGCAGCGCCGGGGAGGCCTTCATCATCTGCGGCACGCTGTACGTCACCAACGGCTACTCAGGG
GGTACCAAGGTCCACTATGCATACCAGACCAATGCCTCCACCTATGAATACATCGACATCCCATTCCAGA
ACAAATACTCCCACATCTCCATGCTGGACTACAACCCCAAGGACCGGGCCCTGTATGCCTGGAACAACGG
CCACCAGATCCTCTACAACGTGACCCTCTTCCACGTCATCCGCTCCGACGAGTTGTAG

Translation (485 aa):
MSVPLLKIGVVLSTMAMITNWMSQTLPSLVGLNTTKLSAAGGGTLDRSTGVLPTNPEESWQVYSSAQDSE
GRCICTVVAPQQTMCSRDARTKQLRQLLEKVQNMSQSIEVLDRRTQRDLQYVEKMENQMKGLESKFKQVE
ESHKQHLARQFKAIKAKMDELRPLIPVLEEYKADAKLVLQFKEEVQNLTSVLNELQEEIGAYDYDELQSR
VSNLEERLRACMQKLACGKLTGISDPVTVKTSGSRFGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSM
VDFMNTDNFTSHRLPHPWSGTGQVVYNGSIYFNKFQSHIIIRFDLKTETILKTRSLDYAGYNNMYHYAWG
GHSDIDLMVDESGLWAVYATNQNAGNIVVSRLDPVSLQTLQTWNTSYPKRSAGEAFIICGTLYVTNGYSG
GTKVHYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQILYNVTLFHVIRSDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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