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Report for CCDS646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
646.1 Public Homo sapiens 1 LRRC40 24 110 108 CCDS HistoryNCBI Gene:55631Re-query CCDS DB by CCDS ID:646.1Re-query CCDS DB by GeneID:55631See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 646.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370952.4 ENSP00000359990.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370952.4Link to Ensembl Protein Viewer:ENSP00000359990.3Re-query CCDS DB by Nucleotide ID:ENST00000370952Re-query CCDS DB by Protein ID:ENSP00000359990
Original member Current member NCBI NM_017768.5 NP_060238.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017768.5Link to Protein Sequence:NP_060238.3Re-query CCDS DB by Nucleotide ID:NM_017768Re-query CCDS DB by Protein ID:NP_060238Link to BLAST:NP_060238.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060238.3 602 Q9H9A6 602 100% 0 0

Chromosomal Locations for CCDS 646.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 70145800 70145905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70148487 70148672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70151128 70151205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70152433 70152543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70155689 70155796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70159330 70159438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70173465 70173510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70173622 70173709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70175810 70175982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70178851 70178993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70181086 70181209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70184785 70184914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70187265 70187338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70189092 70189273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70205390 70205540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGTCGCGCCTGAAGCGGATAGCGGGGCAGGATCTCCGCGCTGGTTTCAAAGCAGGTGGAAGAGACTGCG
GTACCTCGGTACCCCAAGGGCTGTTGAAGGCAGCGAGGAAGAGCGGCCAGTTAAACCTGTCGGGTAGAAA
CCTCAGTGAAGTGCCGCAGTGTGTCTGGAGAATAAATGTGGATATCCCTGAGGAAGCTAATCAGAATCTT
TCGTTTGGTGCTACTGAAAGATGGTGGGAGCAGACAGATTTGACCAAACTAATAATATCAAACAATAAAC
TTCAGTCACTTACAGATGACCTGCGACTCTTGCCTGCACTGACTGTTCTTGATATACATGATAATCAGTT
GACATCCCTTCCTTCTGCTATAAGAGAGCTAGAAAATCTTCAGAAACTTAATGTCAGCCATAATAAACTG
AAAATACTCCCTGAAGAAATTACAAACCTAAGAAACCTGAAGTGCCTGTATCTCCAGCATAATGAATTAA
CCTGCATATCAGAGGGATTTGAACAACTTTCCAATTTAGAAGATTTAGATCTTTCAAACAATCATCTTAC
AACTGTTCCTGCTAGTTTTTCTTCTCTGTCCAGTCTGGTGCGACTCAATCTTTCTAGTAATGAACTGAAG
AGTTTGCCAGCAGAAATAAATAGAATGAAAAGGTTGAAGCATTTGGATTGTAATTCAAATCTCTTGGAAA
CTATACCTCCTGAATTGGCTGGCATGGAATCACTAGAATTGCTTTATTTGCGGAGGAATAAATTACGTTT
TCTACCAGAATTTCCTTCTTGTAGTCTATTGAAGGAATTGCACGTAGGTGAAAACCAGATTGAAATGTTA
GAGGCAGAACATCTTAAACATCTGAATTCAATTCTTGTGCTAGACCTGAGGGATAACAAGTTAAAATCTG
TTCCAGATGAAATTATACTACTACGGTCCTTGGAAAGGCTTGACCTAAGCAACAATGATATTAGTAGTCT
TCCCTATTCATTGGGGAACCTTCATTTGAAATTTTTGGCATTAGAAGGAAATCCTTTGAGAACAATTCGA
AGAGAAATTATAAGTAAAGGAACACAAGAAGTCCTAAAATATCTACGAAGCAAGATCAAAGATGATGGAC
CTAGCCAAAGTGAGTCTGCTACTGAGACTGCCATGACACTACCAAGTGAATCCAGAGTCAATATACATGC
CATCATTACATTAAAAATATTAGACTATAGTGATAAACAAGCAACTTTGATTCCTGATGAGGTGTTTGAT
GCAGTAAAAAGCAACATCGTCACTTCTATTAACTTCAGTAAGAATCAACTATGTGAAATTCCAAAAAGGA
TGGTAGAACTGAAGGAAATGGTTTCTGATGTCGATCTCAGTTTTAATAAACTTTCCTTTATATCCTTGGA
GTTATGTGTGCTTCAGAAATTGACTTTTTTAGATCTCAGGAACAATTTTTTAAATTCTTTGCCAGAAGAA
ATGGAATCACTGGTAAGACTGCAAACGATCAATCTTTCCTTTAATAGGTTTAAAATGCTACCTGAAGTTC
TATATCGTATCTTCACACTTGAAACAATTCTGATTAGTAATAATCAGGTTGGATCTGTGGACCCTCAGAA
AATGAAGATGATGGAAAATCTGACCACGTTGGACCTTCAAAATAATGACCTCTTACAAATTCCACCAGAG
CTCGGTAATTGTGTAAACTTAAGAACATTACTACTGGATGGAAATCCATTCCGAGTTCCTCGAGCAGCCA
TATTAATGAAAGGAACAGCTGCTATACTTGAATATTTGAGAGACCGAATTCCTACTTAA

Translation (602 aa):
MSRLKRIAGQDLRAGFKAGGRDCGTSVPQGLLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNL
SFGATERWWEQTDLTKLIISNNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKL
KILPEEITNLRNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELK
SLPAEINRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLPEFPSCSLLKELHVGENQIEML
EAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIR
REIISKGTQEVLKYLRSKIKDDGPSQSESATETAMTLPSESRVNIHAIITLKILDYSDKQATLIPDEVFD
AVKSNIVTSINFSKNQLCEIPKRMVELKEMVSDVDLSFNKLSFISLELCVLQKLTFLDLRNNFLNSLPEE
MESLVRLQTINLSFNRFKMLPEVLYRIFTLETILISNNQVGSVDPQKMKMMENLTTLDLQNNDLLQIPPE
LGNCVNLRTLLLDGNPFRVPRAAILMKGTAAILEYLRDRIPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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