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Report for CCDS6456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6456.1 Public Homo sapiens 9 RCL1 24 110 108 CCDS HistoryNCBI Gene:10171Re-query CCDS DB by CCDS ID:6456.1Re-query CCDS DB by GeneID:10171See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6456.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381750.9 ENSP00000371169.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381750.9Link to Ensembl Protein Viewer:ENSP00000371169.4Re-query CCDS DB by Nucleotide ID:ENST00000381750Re-query CCDS DB by Protein ID:ENSP00000371169
Original member Current member NCBI NM_005772.5 NP_005763.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005772.5Link to Protein Sequence:NP_005763.3Re-query CCDS DB by Nucleotide ID:NM_005772Re-query CCDS DB by Protein ID:NP_005763Link to BLAST:NP_005763.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005763.3 373 Q9Y2P8-1 373 100% 0 0

Chromosomal Locations for CCDS 6456.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 4793092 4793227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4823548 4823619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4826858 4827033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4833154 4833228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4834141 4834265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4841232 4841357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4844525 4844681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4849447 4849550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4860125 4860275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGGCGACTCAGGCGCACTCCCTCAGCTACGCAGGGTGCAACTTCTTGCGCCAACGTCTGGTCCTGTCTA
CCCTGAGCGGGCGCCCCGTCAAAATCCGAAAGATTCGGGCCAGAGACGACAACCCGGGCCTCCGAGATTT
TGAAGCCAGCTTCATAAGGCTATTGGACAAAATAACGAATGGTTCTCGAATTGAAATAAACCAAACAGGA
ACAACCTTATATTATCAGCCTGGCCTCCTGTATGGTGGATCTGTGGAACATGACTGTAGCGTCCTTCGTG
GCATTGGGTATTACCTGGAGAGTCTTCTTTGCTTGGCTCCATTTATGAAGCACCCGTTAAAAATAGTTCT
ACGAGGAGTGACCAATGATCAGGTTGACCCTTCAGTTGATGTTCTTAAGGCAACAGCACTCCCTTTGTTG
AAACAATTTGGGATTGATGGTGAATCATTTGAACTGAAGATTGTGCGACGGGGAATGCCTCCCGGAGGAG
GAGGCGAAGTGGTTTTCTCATGTCCTGTGAGGAAGGTCTTGAAGCCCATTCAACTCACAGATCCAGGAAA
AATCAAACGTATTAGAGGAATGGCGTACTCTGTACGTGTGTCACCTCAGATGGCGAACCGGATTGTGGAT
TCTGCAAGGAGCATCCTCAACAAGTTCATACCTGATATCTATATTTACACAGATCACATGAAAGGAGTCA
ACTCTGGGAAGTCTCCGGGCTTTGGGTTGTCACTGGTTGCTGAGACCACCAGTGGCACCTTCCTCAGTGC
TGAACTGGCCTCCAACCCCCAGGGCCAGGGAGCAGCAGTACTTCCAGAGGACCTTGGCAGGAACTGTGCC
CGGCTGCTGCTGGAGGAAATCTACAGGGGTGGATGCGTAGACTCGACCAACCAAAGCCTGGCGCTACTAC
TCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTAGGCCCTCTCTCTCCCTACACGATAGAATT
TTTGCGGCATTTGAAGAGCTTTTTCCAGATTATGTTTAAAATTGAAACCAAGCCATGTGGTGAAGAACTC
AAGGGTGGGGATAAAGTGCTGATGACCTGTGTTGGCATTGGTTTCTCCAACCTTAGCAAGACCCTCAAGT
GA

Translation (373 aa):
MATQAHSLSYAGCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTG
TTLYYQPGLLYGGSVEHDCSVLRGIGYYLESLLCLAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLL
KQFGIDGESFELKIVRRGMPPGGGGEVVFSCPVRKVLKPIQLTDPGKIKRIRGMAYSVRVSPQMANRIVD
SARSILNKFIPDIYIYTDHMKGVNSGKSPGFGLSLVAETTSGTFLSAELASNPQGQGAAVLPEDLGRNCA
RLLLEEIYRGGCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQIMFKIETKPCGEEL
KGGDKVLMTCVGIGFSNLSKTLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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