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Report for CCDS6444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6444.1 Public Homo sapiens 9 DMRT2 24 110 108 CCDS HistoryNCBI Gene:10655Re-query CCDS DB by CCDS ID:6444.1Re-query CCDS DB by GeneID:10655See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6444.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358146.7 ENSP00000350865.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358146.7Link to Ensembl Protein Viewer:ENSP00000350865.2Re-query CCDS DB by Nucleotide ID:ENST00000358146Re-query CCDS DB by Protein ID:ENSP00000350865
Original member Current member EBI ENST00000382251.7 ENSP00000371686.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382251.7Link to Ensembl Protein Viewer:ENSP00000371686.3Re-query CCDS DB by Nucleotide ID:ENST00000382251Re-query CCDS DB by Protein ID:ENSP00000371686
Original member Current member NCBI NM_001387558.1 NP_001374487.1 Accepted alive Link to Nucleotide Sequence:NM_001387558.1Link to Protein Sequence:NP_001374487.1Re-query CCDS DB by Nucleotide ID:NM_001387558Re-query CCDS DB by Protein ID:NP_001374487Link to BLAST:NP_001374487.1
Original member Current member NCBI NM_001387559.1 NP_001374488.1 Accepted alive Link to Nucleotide Sequence:NM_001387559.1Link to Protein Sequence:NP_001374488.1Re-query CCDS DB by Nucleotide ID:NM_001387559Re-query CCDS DB by Protein ID:NP_001374488Link to BLAST:NP_001374488.1
Original member Current member NCBI NM_181872.6 NP_870987.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181872.6Link to Protein Sequence:NP_870987.2Re-query CCDS DB by Nucleotide ID:NM_181872Re-query CCDS DB by Protein ID:NP_870987Link to BLAST:NP_870987.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001374487.1 561 Q9Y5R5-1 561 100% 0 0
NP_001374488.1 561 Q9Y5R5-1 561 100% 0 0
NP_870987.2 561 Q9Y5R5-1 561 100% 0 0

Chromosomal Locations for CCDS 6444.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 1051614 1052138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 1053722 1053824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 1056216 1057273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGGCCGACCCGCAGGCTGGCTCCGCGGCCGGGGACTGGGAGATCGATGTCGAGAGCCTGGAGCTGGAAG
AGGACGTCTGCGGGGCGCCGCGGTCCACGCCCCCCGGGCCCAGCCCGCCGCCGGCGGACGGGGACTGCGA
GGACGACGAAGATGACGACGGGGTGGACGAAGACGCGGAAGAAGAGGGCGACGGCGAGGAGGCAGGCGCG
TCCCCCGGGATGCCCGGCCAGCCGGAGCAGCGGGGGGGACCGCAGCCGAGGCCGCCGCTCGCGCCTCAGG
CCTCACCCGCCGGCACCGGTCCCCGAGAGCGCTGCACTCCCGCGGGCGGCGGCGCGGAGCCGCGCAAGCT
GAGCCGCACGCCCAAGTGCGCGCGCTGCCGCAACCACGGCGTGGTGTCCTGCCTGAAGGGCCACAAGCGC
TTCTGTCGCTGGCGCGACTGCCAGTGCGCCAACTGCCTGCTGGTGGTGGAGCGGCAGCGCGTCATGGCCG
CCCAGGTGGCGCTCCGGAGGCAGCAGGCCACCGAGGACAAGAAGGGGCTTTCCGGGAAACAGAATAATTT
CGAGCGCAAAGCTGTGTACCAGAGGCAAGTCAGAGCCCCCAGTTTGCTGGCCAAAAGCATTTTAGAAGGC
TATCGCCCCATTCCAGCGGAGACTTATGTAGGAGGGACCTTCCCTCTACCTCCCCCAGTTAGTGACAGGA
TGAGGAAAAGAAGAGCCTTTGCTGATAAAGAGTTGGAGAACATTATGCTGGAGAGAGAATATAAAGAAAG
GGAGATGTTGGAAACTTCTCAAGCTGCTGCTCTGTTTCTGCCCAACCGCATGGTGCCTGGACCTGACTAC
AATTCCTACAAAAGTGCCTACAGCCCCAGCCCAGTGGAACCACCAAGCAAGGACTTCTGTAATTTTTTGC
CCACCTGCCTTGATTTAACCATGCAGTATTCAGGGTCTGGGAATATGGAACTAATTTCTTCTAATGTCAG
CGTGGCCACAACTTATAGACAGTATCCCTTGTCCTCAAGATTTTTAGTTTGGCCCAAGTGTGGCCCCATT
AGCGACACCCTCCTCTACCAGCAATGCCTGCTAAATGCCACCACCTCAGTTCAAGCCCTGAAGCCTGGGG
CCAGCTGGGACTTGAAGGGAGCACGAGTCCAGGATGGACTCAGTGCAGAGCAGGACATGATGCCATCGAA
ATTGGAAGGTTCCCTGGTGCTGCCTCACACTCCTGAGATCCAGACCACGAGAAGTGACCTTCAGGGTCAT
CAGGCTGTCCCAGAGAGGTCCGCGTTCTCCCCACCCCGACGGAATTTCTCTCCCATTGTTGACACGGACT
CCCTGGCAGCTCAAGGGCATGTCTTAACGAAGATCAGCAAAGAAAACACCAGGCACCCTCTGCCACTTAG
ACATAATCCATTCCACTCATTATTCCAGCAAACACTTACTGACAAATCGGGTCCTGAGTTGAAAACACCA
TTTGTCAAAGAGGCCTTTGAAGAGACCCCTAAGAAACACAGAGAGTGTTTAGTTAAGGACAACCAGAAGT
ACACATTTACAATAGATAGATGTGCAAAAGACCTTTTTGTAGCCAAACAAGTTGGAACAAAACTCTCGGT
GAATGAACCACTGTCATTTTCTGTTGAGTCTATTCTTAAGAGGCCTTCATCTGCCATCACTCGTGTCTCT
CAGTGA

Translation (561 aa):
MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAEEEGDGEEAGA
SPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRTPKCARCRNHGVVSCLKGHKR
FCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGLSGKQNNFERKAVYQRQVRAPSLLAKSILEG
YRPIPAETYVGGTFPLPPPVSDRMRKRRAFADKELENIMLEREYKEREMLETSQAAALFLPNRMVPGPDY
NSYKSAYSPSPVEPPSKDFCNFLPTCLDLTMQYSGSGNMELISSNVSVATTYRQYPLSSRFLVWPKCGPI
SDTLLYQQCLLNATTSVQALKPGASWDLKGARVQDGLSAEQDMMPSKLEGSLVLPHTPEIQTTRSDLQGH
QAVPERSAFSPPRRNFSPIVDTDSLAAQGHVLTKISKENTRHPLPLRHNPFHSLFQQTLTDKSGPELKTP
FVKEAFEETPKKHRECLVKDNQKYTFTIDRCAKDLFVAKQVGTKLSVNEPLSFSVESILKRPSSAITRVS
Q


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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