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Report for CCDS644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
644.1 Public Homo sapiens 1 DEPDC1 24 110 108 CCDS HistoryNCBI Gene:55635Re-query CCDS DB by CCDS ID:644.1Re-query CCDS DB by GeneID:55635See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 644.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370966.9 ENSP00000360005.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370966.9Link to Ensembl Protein Viewer:ENSP00000360005.5Re-query CCDS DB by Nucleotide ID:ENST00000370966Re-query CCDS DB by Protein ID:ENSP00000360005
Original member Current member NCBI NM_017779.6 NP_060249.2 Accepted alive Link to Nucleotide Sequence:NM_017779.6Link to Protein Sequence:NP_060249.2Re-query CCDS DB by Nucleotide ID:NM_017779Re-query CCDS DB by Protein ID:NP_060249Link to BLAST:NP_060249.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060249.2 527 Q5TB30-2 527 100% 0 0

Chromosomal Locations for CCDS 644.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 68476932 68477069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68477787 68477972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68479144 68479320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68481440 68481612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68483950 68484090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68486937 68486984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68488374 68488504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68488916 68489034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68489452 68489608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68494430 68494695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68496952 68496999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGAGAGTCAGGGTGTGCCTCCCGGGCCTTATCGGGCCACCAAGCTGTGGAATGAAGTTACCACATCTT
TTCGAGCAGGAATGCCTCTAAGAAAACACAGACAACACTTTAAAAAATATGGCAATTGTTTCACAGCAGG
AGAAGCAGTGGATTGGCTTTATGACCTATTAAGAAATAATAGCAATTTTGGTCCTGAAGTTACAAGGCAA
CAGACTATCCAACTGTTGAGGAAATTTCTTAAGAATCATGTAATTGAAGATATCAAAGGGAGGTGGGGAT
CAGAAAATGTTGATGATAACAACCAGCTCTTCAGATTTCCTGCAACTTCGCCACTTAAAACTCTACCACG
AAGGTATCCAGAATTGAGAAAAAACAACATAGAGAACTTTTCCAAAGATAAAGATAGCATTTTTAAATTA
CGAAACTTATCTCGTAGAACTCCTAAAAGGCATGGATTACATTTATCTCAGGAAAATGGCGAGAAAATAA
AGCATGAAATAATCAATGAAGATCAAGAAAATGCAATTGATAATAGAGAACTAAGCCAGGAAGATGTTGA
AGAAGTTTGGAGATATGTTATTCTGATCTACCTGCAAACCATTTTAGGTGTGCCATCCCTAGAAGAAGTC
ATAAATCCAAAACAAGTAATTCCCCAATATATAATGTACAACATGGCCAATACAAGTAAACGTGGAGTAG
TTATACTACAAAACAAATCAGATGACCTCCCTCACTGGGTATTATCTGCCATGAAGTGCCTAGCAAATTG
GCCAAGAAGCAATGATATGAATAATCCAACTTATGTTGGATTTGAACGAGATGTATTCAGAACAATCGCA
GATTATTTTCTAGATCTCCCTGAACCTCTACTTACTTTTGAATATTACGAATTATTTGTAAACATTTTGG
GCTTGCTGCAACCTCATTTAGAGAGGGTTGCCATCGATGCTCTACAGTTATGTTGTTTGTTACTTCCCCC
ACCAAATCGTAGAAAGCTTCAACTTTTAATGCGTATGATTTCCCGAATGAGTCAAAATGTTGATATGCCC
AAACTTCATGATGCAATGGGTACGAGGTCACTGATGATACATACCTTTTCTCGATGTGTGTTATGCTGTG
CTGAAGAAGTGGATCTTGATGAGCTTCTTGCTGGAAGATTAGTTTCTTTCTTAATGGATCATCATCAGGA
AATTCTTCAAGTACCCTCTTACTTACAGACTGCAGTGGAAAAACATCTTGACTACTTAAAAAAGGGACAT
ATTGAAAATCCTGGAGATGGACTATTTGCTCCTTTGCCAACTTACTCATACTGTAAGCAGATTAGTGCTC
AGGAGTTTGATGAGCAAAAAGTTTCTACCTCTCAAGCTGCAATTGCAGAACTTTTAGAAAATATTATTAA
AAACAGGAGTTTACCTCTAAAGGAGAAAAGAAAAAAACTAAAACAGTTTCAGAAGGAATATCCTTTGATA
TATCAGAAAAGATTTCCAACCACGGAGAGTGAAGCAGCACTTTTTGGTGACAAACCTACAATCAAGCAAC
CAATGCTGATTTTAAGAAAACCAAAGTTCCGTAGTCTAAGATAA

Translation (527 aa):
MESQGVPPGPYRATKLWNEVTTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNNSNFGPEVTRQ
QTIQLLRKFLKNHVIEDIKGRWGSENVDDNNQLFRFPATSPLKTLPRRYPELRKNNIENFSKDKDSIFKL
RNLSRRTPKRHGLHLSQENGEKIKHEIINEDQENAIDNRELSQEDVEEVWRYVILIYLQTILGVPSLEEV
INPKQVIPQYIMYNMANTSKRGVVILQNKSDDLPHWVLSAMKCLANWPRSNDMNNPTYVGFERDVFRTIA
DYFLDLPEPLLTFEYYELFVNILGLLQPHLERVAIDALQLCCLLLPPPNRRKLQLLMRMISRMSQNVDMP
KLHDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVSFLMDHHQEILQVPSYLQTAVEKHLDYLKKGH
IENPGDGLFAPLPTYSYCKQISAQEFDEQKVSTSQAAIAELLENIIKNRSLPLKEKRKKLKQFQKEYPLI
YQKRFPTTESEAALFGDKPTIKQPMLILRKPKFRSLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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