NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6431.1 Public Homo sapiens 8 MFSD3 24 110 108 CCDS HistoryNCBI Gene:113655Re-query CCDS DB by CCDS ID:6431.1Re-query CCDS DB by GeneID:113655See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6431.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301327.5 ENSP00000301327.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301327.5Link to Ensembl Protein Viewer:ENSP00000301327.3Re-query CCDS DB by Nucleotide ID:ENST00000301327Re-query CCDS DB by Protein ID:ENSP00000301327
Original member Current member NCBI NM_138431.3 NP_612440.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138431.3Link to Protein Sequence:NP_612440.1Re-query CCDS DB by Nucleotide ID:NM_138431Re-query CCDS DB by Protein ID:NP_612440Link to BLAST:NP_612440.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612440.1 412 Q96ES6 412 100% 0 0

Chromosomal Locations for CCDS 6431.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144509334 144510015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144510360 144510507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144510598 144510722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144510794 144510903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144510991 144511164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGCGCGGGAAGTTGCTGCCGCTGGCCGGCCTCTACCTGGTGCAGGGCCTGCCCTACGGGCTCCAGTCCG
GCCTCCTGCCAGTGCTGCTGCGTGCCGGCGGCCTCTCGCTGACGCGCGTGGGGCTGGCCAAGGTTCTGTA
CGCTCCGTGGCTGCTCAAGCTGGCTTGGGCCCCGCTGGTGGACGCGCAGGGCTCGGCGAGGGCCTGGGTG
ACGCGCAGCACGGCGGGCCTGGGCCTGGTGTGTGGGCTGCTTGCCGGGCTGCCCCCTCCTGGAGCTGGCC
AGGCCGGGCTGCCCGCCGCTGTGGCGGGGTTGCTGCTGTTGTTGAACCTGGGTGCCGCCATGCAGGATGT
GGCCCTGGACGCGCTGGCTGTGCAGCTGCTGGAGCCGGCCGAACTGGGGCCGGGCAATACCGTGCAGGTG
GTCGCGTACAAGCTGGGGGCCGCGCTAGCTGGGGGCGCGCTGCTGGCGCTGCTGCCCACCTTCTCGTGGC
CGCAACTCTTTCTGCTCCTGGCTGCCACCTACTGGCTGGCCGCGGCCCTGGCCTGGGCTGCACCAGCCCT
GCGGCGGCTCCCACAGCAGCCCCCTTCCGAGCAGCGTCCCCACACCGCGCACCTTCTGCGGGACGTGCTA
GCCGTGCCGGGGACCGTGTGGACGGCAGGCTTTGTGCTCACCTACAAGCTGGGTGAGCAGGGTGCCAGCA
GCCTGTTTCCTCTTCTCCTGCTGGACCACGGCGTTTCTGCTCCCGAGTTGGGACTGTGGAATGGTGTGGG
TGCTGTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCTGGCCAAGCACTGGAAACTGCTG
CCTCTGTTGAGGTCGGTGCTGCGCTTCCGCCTCGGGGGCCTAGCCTGTCAGACTGCCTTGGTCTTCCACC
TGGACACCCTGGGGGCCAGCATGGACGCTGGCACAATCTTGAGAGGGTCAGCCTTGCTGAGCCTATGTCT
GCAGCACTTCTTGGGAGGCCTGGTCACCACAGTCACCTTCACTGGGATGATGCGCTGCAGCCAGCTGGCC
CCCAGGGCCCTGCAGGCCACACACTACAGCCTTCTGGCCACGCTGGAGCTGCTGGGGAAGCTGCTGCTGG
GCACTCTGGCCGGAGGCCTGGCTGATGGGTTGGGGCCACATCCCTGCTTCTTGCTCCTGCTCATCCTCTC
TGCCTTTCCCGTTCTGTACCTGGACCTAGCACCCAGCACCTTTCTCTGA

Translation (412 aa):
MRGKLLPLAGLYLVQGLPYGLQSGLLPVLLRAGGLSLTRVGLAKVLYAPWLLKLAWAPLVDAQGSARAWV
TRSTAGLGLVCGLLAGLPPPGAGQAGLPAAVAGLLLLLNLGAAMQDVALDALAVQLLEPAELGPGNTVQV
VAYKLGAALAGGALLALLPTFSWPQLFLLLAATYWLAAALAWAAPALRRLPQQPPSEQRPHTAHLLRDVL
AVPGTVWTAGFVLTYKLGEQGASSLFPLLLLDHGVSAPELGLWNGVGAVVCSIAGSSLGGTLLAKHWKLL
PLLRSVLRFRLGGLACQTALVFHLDTLGASMDAGTILRGSALLSLCLQHFLGGLVTTVTFTGMMRCSQLA
PRALQATHYSLLATLELLGKLLLGTLAGGLADGLGPHPCFLLLLILSAFPVLYLDLAPSTFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH