NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS64285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64285.1 Public Homo sapiens 5 FBXO38 24 110 108 CCDS HistoryNCBI Gene:81545Re-query CCDS DB by CCDS ID:64285.1Re-query CCDS DB by GeneID:81545See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64285.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296701.10 ENSP00000296701.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000296701.10Link to Ensembl Protein Viewer:ENSP00000296701.6Re-query CCDS DB by Nucleotide ID:ENST00000296701Re-query CCDS DB by Protein ID:ENSP00000296701
Original member Current member EBI ENST00000513826.1 ENSP00000426410.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513826.1Link to Ensembl Protein Viewer:ENSP00000426410.1Re-query CCDS DB by Nucleotide ID:ENST00000513826Re-query CCDS DB by Protein ID:ENSP00000426410
Original member Current member NCBI NM_001271723.2 NP_001258652.1 Accepted alive Link to Nucleotide Sequence:NM_001271723.2Link to Protein Sequence:NP_001258652.1Re-query CCDS DB by Nucleotide ID:NM_001271723Re-query CCDS DB by Protein ID:NP_001258652Link to BLAST:NP_001258652.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258652.1 943 Q6PIJ6-3 943 100% 0 0

Chromosomal Locations for CCDS 64285.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 148394777 148394904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148398999 148399132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148401982 148402145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148402348 148402513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148404685 148404822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148406257 148406394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148409124 148409217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148410635 148410765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148414136 148414306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148415928 148416070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148416994 148417204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148423998 148424117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148425522 148425701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148433424 148433524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148433635 148433737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148438332 148438498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148439647 148439792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148440424 148440527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148441124 148441237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148441969 148442147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2832 nt):
ATGGGGCCACGAAAGAAAAGTGTGAAAACATGTATCATGAATAATGAAATTCCAGAAGAAATGACAGCAG
ATGAAACAAAGGACTATATGAATCAACTTTCACATGAAGTACTTTGCCATATTTTTAGGTACCTCCCTCT
GCAGGATATCATGTGTATGGAATGTCTTTCCCGGAAGCTAAAGGAAGCAGTGACCCTATATCTGCGAGTT
GTGAGAGTTGTAGATCTCTGTGCAGGGCGGTGGTGGGAATACATGCCAAGTGGCTTTACAGATGCCAGTT
TTCTAACACTATTAAAGAAGATGCCAGATGTTGAACAGCTATATGGCCTTCACCCTCGATACCTTGAGAG
GCGAAGAGTAAGGGGCCATGAGGCTTTTAGCATTCCAGGAGTCCTAGAAGCTTTGCAGGCATGCCCAAAC
TTAGTGGGTGTGGAAACTTCTCATTTGGAGTTGGTAGAATCCATTTGGACATATATGCCCCATGTTCATA
TTTTGGGGAAATTTCGTAATCGTAATGGAGCTTTTCCAATTCCTCCTGAAAATAAACTGAAAATTCCTAT
AGGAGCCAAAATTCAAACTTTACATTTAGTTGGGGTGAATGTTCCTGAAATTCCTTGTATCCCAATGCTA
AGGCACCTTTATATGAAGTGGGTAAGACTCACTAAACCACAGCCATTTAAAGACTTCCTTTGTATCAGCT
TAAGAACTTTCGTCATGAGGAACTGTGCAGGACCCACAAATTCCTTGAAATATGTCCCTTTAGTAACAGG
CTTAGCCTCTGCCCGAAACTTGGAACACTTAGAAATGGTTCGAGTTCCTTTCCTTGGAGGTCTTATCCAA
CATGTTGTTGAAGACAGTTGGAGATCAGGTGGTTTTAGAAATTTGCACACTATTGTTCTGGGAGCTTGCA
AAAATGCTCTTGAAGTAGATCTTGGTTACCTCATCATTACTGCTGCCCGTAGGTTACATGAAGTTCGGAT
CCAGCCTTCCCTAACCAAAGATGGTGTCTTTTCTGCCCTAAAGATGGCAGAGTTGGAGTTTCCCCAGTTT
GAAACCCTTCATCTAGGATATGTAGATGAGTTTTTGCTACAGAGCAGAATGGCTAATGCGGATCTGGTGA
AGTATGGTTTGGCTGATGTGGTAGAAAATCCTGGTATCATCACTGATATAGGGATGAAAGCAGTCAATGA
AGTTTTTTCCTGTATCAAATATCTGGCAATTTACAATTGCCCTCATCTACACAACCCATACAATTGGATC
TCAGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAGTACGGTGCCATGCTTTGAAGCTGGACT
CTTTTGGCCAGTTTATTGAATTATTACCCAGCCTAGAGTTTATTTCACTGGATCAGATGTTTCGTGAACC
ACCCAAGGGTTGTGCTCGAGTTGGTCTGAGTGCAGGCACAGGAATTGGTGTTTCATCAGCTCTTGTTAGC
AACCAGAACTCCAACAATGACGATAATAATGCCCAGAATAACAATGCCAACATCCACGACAACAATCACC
ATCATCCAGATGACTCAGACGAGGAGAATGACTTTCGGCAAGATCTGCAGCCAGGAGAGCAGCAGTTTGC
AGCTGACGCATTAAATGAGATGGAAGACATCGTCCAAGAAGATGGAGAGGTGGTGGCCGAGAGTGGAAAT
AATACTCCAGCTCACAGCCAGGCAATTATTCCTGTGGATGTTGATGAGGAACAAGCAGGACCCAGTGGTC
TTCAGCGTGTAGTAAAACCAACCTCAATTACTGTTCATGATTCAGAGAGTGATGATGAAGAAGATAGTCT
AGAACTCCAAGAAGTCTGGATTCCTAAGAACGGTACTCGGCGTTACTCTGAACGTGAAGAAAAAACTGGA
GAGTCAGTGCAGTCCAGAGAATTGTCAGAAGTAGCCAAAACAAAGCCACGTCACGCCATGAAACGGAAGC
GGACAGCAGATAAATCCACTAGTACAAGTGATCCTGTGATCGAGGATGACCATGTGCAGGTTCTTGTATT
AAAATCCAAGAATCTTGTTGGAGTCACTATGACCAATTGTGGAATCACAGATCTAGTGCTAAAAGACTGT
CCAAAGATGATGTTCATCCATGCTACCAGGTGCAGGGTACTAAAACATTTAAAGGTAGAAAATGCACCAA
TTGTAAACCGATTTGACTATGCACAGTGCAAGAAACTGAACATGGATCAGGTACTAGACCAGATACTAAG
AATGCCACCCGAGAGAAACCGCATCATATACCTACGCCCAATGCAGCAGGTGGACACTCTAACTTTGGAG
CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCATGAATTCAGTAACCCTCCCAATG
TCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCAAACATCAATCAAGAGCTCATTAAATA
TGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATACCCCAAGTACCCCTGGGGGAGA
GAAATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTTCTGACTTCCCTTGGCTGA
GGTCATTACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGATGAAGAAAGCACTAT
CTATGCTCCTAGAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGAGGAAATTTCA
GAGATGCGTCAGATGAAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTGATGTCA
ATGGAGAGCCAGTTGAAGATGACTACATTTAA

Translation (943 aa):
MGPRKKSVKTCIMNNEIPEEMTADETKDYMNQLSHEVLCHIFRYLPLQDIMCMECLSRKLKEAVTLYLRV
VRVVDLCAGRWWEYMPSGFTDASFLTLLKKMPDVEQLYGLHPRYLERRRVRGHEAFSIPGVLEALQACPN
LVGVETSHLELVESIWTYMPHVHILGKFRNRNGAFPIPPENKLKIPIGAKIQTLHLVGVNVPEIPCIPML
RHLYMKWVRLTKPQPFKDFLCISLRTFVMRNCAGPTNSLKYVPLVTGLASARNLEHLEMVRVPFLGGLIQ
HVVEDSWRSGGFRNLHTIVLGACKNALEVDLGYLIITAARRLHEVRIQPSLTKDGVFSALKMAELEFPQF
ETLHLGYVDEFLLQSRMANADLVKYGLADVVENPGIITDIGMKAVNEVFSCIKYLAIYNCPHLHNPYNWI
SDHSRWTRLVDINLVRCHALKLDSFGQFIELLPSLEFISLDQMFREPPKGCARVGLSAGTGIGVSSALVS
NQNSNNDDNNAQNNNANIHDNNHHHPDDSDEENDFRQDLQPGEQQFAADALNEMEDIVQEDGEVVAESGN
NTPAHSQAIIPVDVDEEQAGPSGLQRVVKPTSITVHDSESDDEEDSLELQEVWIPKNGTRRYSEREEKTG
ESVQSRELSEVAKTKPRHAMKRKRTADKSTSTSDPVIEDDHVQVLVLKSKNLVGVTMTNCGITDLVLKDC
PKMMFIHATRCRVLKHLKVENAPIVNRFDYAQCKKLNMDQVLDQILRMPPERNRIIYLRPMQQVDTLTLE
QKLFSGPYPYHICIIHEFSNPPNVRNKVRIRSWMDTIANINQELIKYEFFPEATRSEEDLKKYPKYPWGR
EIYTLEGVVDGAPYSMISDFPWLRSLRAAEPNSFARYDFEDDEESTIYAPRRKGQLSADICMETIGEEIS
EMRQMKKGVFQRVVAIFIHYCDVNGEPVEDDYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH