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Report for CCDS6413.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6413.2 Public Homo sapiens 8 SPATC1 24 110 108 CCDS HistoryNCBI Gene:375686Re-query CCDS DB by CCDS ID:6413.2Re-query CCDS DB by GeneID:375686See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 6413.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data. The extension adds an N-terminal coiled-coil region to the protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6413.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377470.8 ENSP00000366690.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377470.8Link to Ensembl Protein Viewer:ENSP00000366690.3Re-query CCDS DB by Nucleotide ID:ENST00000377470Re-query CCDS DB by Protein ID:ENSP00000366690
Original member Current member NCBI NM_198572.3 NP_940974.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198572.3Link to Protein Sequence:NP_940974.2Re-query CCDS DB by Nucleotide ID:NM_198572Re-query CCDS DB by Protein ID:NP_940974Link to BLAST:NP_940974.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940974.2 591 Q76KD6-1 591 100% 0 0

Chromosomal Locations for CCDS 6413.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144012516 144012726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144039909 144040463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144040568 144041107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144041232 144041371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144046627 144046956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGTCTCTACTCACCAATTATGAAGGGCTTCGGCATCAGATAGAGAGGCTGGTGCGGGAAAATGAGGAAC
TGAAGAAGTTGGTGCGGCTCATTCGGGAGAATCACGAGCTCAAGTCAGCGATCAAGACTCAGGCAGGCGG
GCTCGGCATCAGCGGGTTCACGAGTGGGCTTGGTGAGGCAACAGCAGGCCTTTCCTCACGCCAGAACAAT
GGTGTCTTCCTGCCCCCGTCCCCAGCAGTGGCAAACGAACGAGTCCTCGAAGAAGTGGGGATCATGGCCT
TGGCACCCCTGGCCGAGATGCTAACCAGCTTGCAGCCCAGCGCCACACCGGGCTCACTCATGAGCCCCCT
GACAGGCACCCTCAGCACGCTGCTGTCTGGCCCAGCACCCACGTCACAGAGCAGCCCCCTCACCAGCTTC
CTGACCAGTCCCATTGCGGGACCCCTAACAGGCACACTGGCCAGTTCCCTGGGCCTGCCCTCCACTGGCA
CCCTGACTCCCAGCAGCCTCGTGGCAGGCCCTGTGGCCATGTCCCAGAGCAGCCCCCTGATAGCCCCTGT
GATGGGCACGGTGGCTGTCTCTCTGAGCAGCCCCCTCCTCAGCTCCACTGCCACCCCACCAGGGGTCTCT
CAGAACCTGCTGGCCAACCCCATGAGCAACCTGGTCCTGCCAGAGGCCCCAAGGCTGCGGCTGGCTGAGC
CACTCCGCGGAGGCCCCACTGGGCCCCAGTCCCCAGCTTGCGTGGTACCCACTGCCACCACCAAAGTCCC
ACTCTCCACTGAGCCCCCCCAGTCGACCCAGGACCCAGAGCCTCTCAGCATGGCGTTTGCAGGAGCACCC
CTCCAGACCTCCACCCCTATCGGAGCCATGGGCACACCTGCTCCCAAGACGGCCTTCTCCTTCAACACTT
CGGACACACAGGCCCAGCCCAGTGCCGCCCAGGAACAAGTGGTCCCTGCATCTGTCCCCACCTCCCCCAC
CACCTCCCCCACGGTCACCGTCCTTGCCTCTGCCCCCGCCCTTGCCCCCCAGGTTGCCACCAGCTACACA
CCCTCAAGCACCACCCACATCGCCCAGGGTGCCCCCCATCCCCCTTCCCGAATGCATAATTCCCCAACCC
AGAACCTGCCTGTCCCCCACTGTCCTCCACACAACGCCCACTCCCCACCTCGTACCTCATCCTCCCCGGC
TTCAGTCAATGACTCTCGAGGTCCACGCACCACAGAACCGTCGACGAAGAGCATGATGGAGGTGGAACGG
AAGCTGGCCCACCGCAAGACCAGCAAGTTCCCCGAGAACCCCCGAGAGTCGAAGCAGCTGGCCTGGGAGA
GGCTGGTGGGTGAGATTGCCTTCCAGCTGGACCGCAGGATCCTGTCCAGCATCTTCCCAGAGCGCGTACG
GCTCTACGGCTTCACTGTCTCCAACATCCCAGAGAAGATCATCCAGGCTTCCCTGAACCCCAGTGACCAC
AAGCTGGATGAGAAGCTGTGCCAGAGGCTCACACAGCGCTATGTGAGCGTCATGAACAGGCTGCAGAGTC
TGGGCTACAACGGGCGGGTGCACCCTGCGCTGACCGAGCAGCTGGTGAACGCTTATGGCATCCTGCGAGA
GCGCCCGGAGCTGGCGGCGTCTGAGGGCGGCCCCTACACCGTGGACTTCCTGCAGCGTGTGGTGGTGGAG
ACCGTGCACCCCGGCATGCTCGCCGACGCGCTGCTGCTGCTCTCCTGCCTCAGCCAGCTGGCGCACGATG
ACGGCAAGCCCATGTTCATCTGGTGA

Translation (591 aa):
MSLLTNYEGLRHQIERLVRENEELKKLVRLIRENHELKSAIKTQAGGLGISGFTSGLGEATAGLSSRQNN
GVFLPPSPAVANERVLEEVGIMALAPLAEMLTSLQPSATPGSLMSPLTGTLSTLLSGPAPTSQSSPLTSF
LTSPIAGPLTGTLASSLGLPSTGTLTPSSLVAGPVAMSQSSPLIAPVMGTVAVSLSSPLLSSTATPPGVS
QNLLANPMSNLVLPEAPRLRLAEPLRGGPTGPQSPACVVPTATTKVPLSTEPPQSTQDPEPLSMAFAGAP
LQTSTPIGAMGTPAPKTAFSFNTSDTQAQPSAAQEQVVPASVPTSPTTSPTVTVLASAPALAPQVATSYT
PSSTTHIAQGAPHPPSRMHNSPTQNLPVPHCPPHNAHSPPRTSSSPASVNDSRGPRTTEPSTKSMMEVER
KLAHRKTSKFPENPRESKQLAWERLVGEIAFQLDRRILSSIFPERVRLYGFTVSNIPEKIIQASLNPSDH
KLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRERPELAASEGGPYTVDFLQRVVVE
TVHPGMLADALLLLSCLSQLAHDDGKPMFIW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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