NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS64085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64085.1 Public Homo sapiens 4 RBM46 24 110 108 CCDS HistoryNCBI Gene:166863Re-query CCDS DB by CCDS ID:64085.1Re-query CCDS DB by GeneID:166863See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514866.5 ENSP00000424500.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514866.5Link to Ensembl Protein Viewer:ENSP00000424500.1Re-query CCDS DB by Nucleotide ID:ENST00000514866Re-query CCDS DB by Protein ID:ENSP00000424500
Original member Current member NCBI NM_001277171.2 NP_001264100.1 Accepted alive Link to Nucleotide Sequence:NM_001277171.2Link to Protein Sequence:NP_001264100.1Re-query CCDS DB by Nucleotide ID:NM_001277171Re-query CCDS DB by Protein ID:NP_001264100Link to BLAST:NP_001264100.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264100.1 485 Q8TBY0-3 485 100% 0 0

Chromosomal Locations for CCDS 64085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154796753 154796903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154797811 154798278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154798782 154799564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154820363 154820418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGAATGAAGAAAATATAGATGGAACAAATGGATGCAGTAAAGTTCGAACTGGTATTCAGAATGAAGCAG
CATTACTTGCTTTGATGGAAAAGACTGGTTACAACATGGTTCAGGAAAATGGACAAAGGAAATTTGGCGG
TCCTCCTCCAGGTTGGGAAGGTCCACCTCCACCTAGAGGCTGTGAAGTTTTTGTAGGAAAAATACCTCGT
GATATGTATGAAGATGAGTTAGTTCCTGTATTTGAAAGAGCTGGGAAGATATATGAATTTCGACTTATGA
TGGAATTTAGTGGTGAAAATCGAGGTTATGCTTTTGTGATGTACACTACAAAAGAAGAAGCCCAATTAGC
CATCAGAATTCTTAATAATTATGAAATTCGACCAGGGAAGTTTATTGGTGTGTGTGTAAGCCTGGATAAT
TGTAGATTATTTATTGGAGCTATTCCCAAGGAAAAGAAGAAAGAAGAAATTTTAGATGAAATGAAGAAAG
TTACAGAAGGAGTTGTAGATGTCATTGTTTATCCAAGTGCAACTGATAAGACCAAAAATCGTGGTTTTGC
ATTTGTGGAATATGAATCTCACAGAGCTGCTGCTATGGCAAGGAGGAAACTAATTCCAGGAACATTCCAA
CTATGGGGCCACACCATTCAGGTAGATTGGGCTGACCCAGAGAAAGAGGTGGATGAGGAAACCATGCAGA
GAGTTAAAGTTCTTTATGTAAGAAATTTAATGATCTCAACTACAGAGGAAACAATTAAAGCAGAATTCAA
TAAATTTAAGCCTGGTGCAGTTGAACGGGTAAAGAAACTTAGAGATTATGCTTTTGTTCACTTTTTCAAC
CGAGAAGATGCAGTGGCTGCCATGTCTGTTATGAATGGAAAATGCATTGATGGAGCAAGTATTGAGGTAA
CACTAGCTAAACCAGTAAATAAAGAAAACACTTGGAGACAGCATCTTAATGGTCAGATTAGTCCAAATTC
TGAAAATCTGATTGTGTTTGCTAACAAAGAAGAGAGCCACCCAAAAACTCTAGGCAAGCTGCCAACTCTT
CCTGCTCGTCTCAATGGTCAGCATAGCCCAAGTCCGCCTGAAGTTGAAAGATGCACTTACCCTTTTTATC
CTGGAACAAAGCTTACTCCAATTAGTATGTATTCTTTAAAATCCAATCATTTTAATTCTGCAGTAATGCA
TTTGGATTATTACTGCAACAAAAATAACTGGGCACCACCAGAATATTATTTATATTCAACAACAAGTCAA
GATGGGAAAGTACTCTTGGTGTATAAGATAGTTATTCCTGCTATTGCAAATGGATCCCAGAGTTACTTCA
TGCCAGACAAACTCTGTACTACGTTAGAAGATGCAAAGGAACTGGCAGCCCAGTTTACATTACTTCATTT
GGACAGGGAACACAATCTCTTCAGCCTGGACCTGTGTAGAAGAATTTGGAGAAAATAA

Translation (485 aa):
MNEENIDGTNGCSKVRTGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPR
DMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDN
CRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQ
LWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFN
REDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKLPTL
PARLNGQHSPSPPEVERCTYPFYPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSTTSQ
DGKVLLVYKIVIPAIANGSQSYFMPDKLCTTLEDAKELAAQFTLLHLDREHNLFSLDLCRRIWRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH