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Report for CCDS63990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63990.1 Public Homo sapiens 4 RCHY1 24 110 108 CCDS HistoryNCBI Gene:25898Re-query CCDS DB by CCDS ID:63990.1Re-query CCDS DB by GeneID:25898See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63990.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000507014.1 ENSP00000424472.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507014.1Link to Ensembl Protein Viewer:ENSP00000424472.1Re-query CCDS DB by Nucleotide ID:ENST00000507014Re-query CCDS DB by Protein ID:ENSP00000424472
Original member Current member NCBI NM_001278537.2 NP_001265466.1 Accepted alive Link to Nucleotide Sequence:NM_001278537.2Link to Protein Sequence:NP_001265466.1Re-query CCDS DB by Nucleotide ID:NM_001278537Re-query CCDS DB by Protein ID:NP_001265466Link to BLAST:NP_001265466.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265466.1 212 Q96PM5-8 212 100% 0 0

Chromosomal Locations for CCDS 63990.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 75482538 75482666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75490581 75490701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75491724 75491782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75491889 75491933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75494101 75494179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75508820 75508935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75514197 75514286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGCGGCGACGGCCCGGGAAGATGGCGCCAGCGGTCAAGAGCGAGGTCAGCGGGGCTGCGAGCACTATG
ACAGAGGATGTCTCCTAAAGGCCCAACAGACTTGTGAAGAATGTAGCACATTGTTTGGAGAATATTATTG
CGATATATGCCATTTGTTTGACAAAGATAAGAAGCAGTATCACTGTGAAAACTGTGGAATTTGTAGGATT
GGTCCAAAGGAAGATTTTTTCCATTGTTTGAAATGTAACTTATGCCTAGCTATGAATCTTCAAGGAAGAC
ACAAGTGTATTGAAAATGTGTCCCGACAGAATTGTCCAATATGTTTGGAGGACATTCACACATCCCGTGT
TGTTGCTCATGTCTTGCCATGTGGACATCTTTTACATAGAGGCTACAGATGTCCATTATGTATGCACTCT
GCTTTAGATATGACCAGGTATTGGAGACAGCTGGATGATGAAGTAGCACAGACTCCTATGCCATCAGAAT
ATCAGAACATGACTGTGGATATTCTCTGCAATGACTGTAATGGACGATCCACTGTTCAGTTTCATATATT
AGGCATGAAATGTAAGATTTGTGAATCCTATAATACTGCTCAAGCTGGAGGACGTAGAATTTCACTGGAT
CAGCAATGA

Translation (212 aa):
MAATAREDGASGQERGQRGCEHYDRGCLLKAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRI
GPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRGYRCPLCMHS
ALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRISLD
QQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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