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Report for CCDS63672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63672.1 Public Homo sapiens 3 FAM107A 24 110 108 CCDS HistoryNCBI Gene:11170Re-query CCDS DB by CCDS ID:63672.1Re-query CCDS DB by GeneID:11170See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63672.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447756.2 ENSP00000400858.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447756.2Link to Ensembl Protein Viewer:ENSP00000400858.2Re-query CCDS DB by Nucleotide ID:ENST00000447756Re-query CCDS DB by Protein ID:ENSP00000400858
Original member Current member NCBI NM_001282713.2 NP_001269642.1 Accepted alive Link to Nucleotide Sequence:NM_001282713.2Link to Protein Sequence:NP_001269642.1Re-query CCDS DB by Nucleotide ID:NM_001282713Re-query CCDS DB by Protein ID:NP_001269642Link to BLAST:NP_001269642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269642.1 172 O95990-3 172 100% 0 0

Chromosomal Locations for CCDS 63672.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58566588 58566695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58567208 58567364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58569691 58569865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58586858 58586936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCGCAGAGGCTGGGCGAGTGGGCCCGGGGGCCCTCCGATGCCACCGGGCTCTACCGGGCTGTGCTGC
TCCGGTCGGCCGCCATGTACTCGGAGATCCAGAGGGAGCGGGCAGACATTGGGGGCCTGATGGCCCGGCC
AGAATACAGAGAGTGGAATCCGGAGCTCATCAAGCCCAAGAAGCTGCTGAACCCCGTGAAGGCCTCTCGG
AGTCACCAGGAGCTCCACCGGGAGCTGCTCATGAACCACAGAAGGGGCCTTGGTGTGGACAGCAAGCCAG
AGCTGCAGCGTGTCCTAGAGCACCGCCGGCGGAACCAGCTCATCAAGAAGAAGAAGGAGGAGCTGGAAGC
CAAGCGGCTGCAGTGCCCCTTTGAGCAGGAGCTGCTGAGACGGCAGCAGAGGCTGAACCAGCTGGAAAAA
CCACCAGAGAAGGAAGAGGATCACGCCCCCGAGTTTATTAAAGTCAGGGAAAACCTGCGGAGAATTGCCA
CACTGACCAGCGAAGAGAGAGAGCTGTAG

Translation (172 aa):
MAQRLGEWARGPSDATGLYRAVLLRSAAMYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVKASR
SHQELHRELLMNHRRGLGVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQQRLNQLEK
PPEKEEDHAPEFIKVRENLRRIATLTSEEREL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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