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Report for CCDS63545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63545.1 Public Homo sapiens 3 MKRN2 24 110 108 CCDS HistoryNCBI Gene:23609Re-query CCDS DB by CCDS ID:63545.1Re-query CCDS DB by GeneID:23609See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63545.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411987.5 ENSP00000396340.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411987.5Link to Ensembl Protein Viewer:ENSP00000396340.1Re-query CCDS DB by Nucleotide ID:ENST00000411987Re-query CCDS DB by Protein ID:ENSP00000396340
Original member Current member NCBI NM_001271707.2 NP_001258636.1 Accepted alive Link to Nucleotide Sequence:NM_001271707.2Link to Protein Sequence:NP_001258636.1Re-query CCDS DB by Nucleotide ID:NM_001271707Re-query CCDS DB by Protein ID:NP_001258636Link to BLAST:NP_001258636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258636.1 373 Q9H000-2 373 100% 0 0

Chromosomal Locations for CCDS 63545.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 12557151 12557176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12570071 12570252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12572069 12572373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12574792 12575006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12576631 12576741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12581808 12581952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12582116 12582253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGAGCACCAAGCAGATCACTTGCAGATATGACCACACGAGGCCCTCTGCTGCAGCTGGAGGTGCTGTGG
GCACCATGGCCCACAGTGTGCCCTCCCCAGCTTTCCACAGTCCTCACCCTCCTTCCGAGGTCACTGCATC
CATTGTGAAAACTAACTCACATGAACCCGGAAAGCGTGAAAAGAGAACATTGGTTCTTAGAGACCGAAAT
CTCTCTGGCATGGCTGAAAGGAAGACCCAGCCGAGCATGGTGAGTAATCCAGGCAGCTGCAGCGACCCCC
AGCCCAGCCCCGAGATGAAGCCGCATTCCTACCTGGATGCCATCAGGAGTGGCCTTGATGACGTGGAGGC
CAGCAGCTCCTACAGCAACGAGCAGCAGCTGTGCCCCTACGCAGCTGCTGGGGAGTGCCGGTTTGGGGAT
GCCTGTGTCTACCTGCACGGGGAGGTGTGTGAAATCTGTAGGCTGCAAGTCTTGCACCCATTCGACCCAG
AGCAGAGGAAGGCTCATGAAAAGATCTGCATGTTGACGTTCGAACACGAGATGGAAAAGGCCTTTGCCTT
CCAGGCAAGCCAGGACAAAGTGTGCAGTATCTGCATGGAAGTGATCCTGGAGAAGGCCTCTGCTTCTGAG
AGGAGATTTGGGATTCTCTCCAATTGCAATCACACGTACTGTTTGTCCTGCATCCGGCAGTGGCGGTGTG
CCAAACAGTTTGAAAACCCAATCATTAAGTCTTGTCCAGAATGCCGTGTGATATCAGAGTTTGTAATTCC
AAGTGTGTATTGGGTGGAAGATCAGAATAAAAAGAACGAGTTGATTGAAGCTTTCAAACAGGGGATGGGG
AAAAAAGCCTGTAAATACTTTGAGCAAGGCAAGGGGACCTGCCCATTTGGAAGCAAATGTCTTTATCGCC
ATGCTTACCCCGATGGGCGGCTAGCAGAGCCTGAGAAACCTCGGAAACAGCTCAGTTCTCAAGGCACTGT
GAGGTTCTTTAATTCAGTGCGGCTCTGGGATTTCATCGAGAACCGAGAAAGCCGGCATGTCCCCAACAAT
GAAGATGTCGACATGACAGAGCTCGGGGACCTCTTCATGCACCTTTCTGGAGTGGAATCATCAGAACCCT
AA

Translation (373 aa):
MSTKQITCRYDHTRPSAAAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRN
LSGMAERKTQPSMVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFGD
ACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASE
RRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMG
KKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKPRKQLSSQGTVRFFNSVRLWDFIENRESRHVPNN
EDVDMTELGDLFMHLSGVESSEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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