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Report for CCDS6321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6321.1 Public Homo sapiens 8 RAD21 24 110 108 CCDS HistoryNCBI Gene:5885Re-query CCDS DB by CCDS ID:6321.1Re-query CCDS DB by GeneID:5885See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6321.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297338.7 ENSP00000297338.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297338.7Link to Ensembl Protein Viewer:ENSP00000297338.2Re-query CCDS DB by Nucleotide ID:ENST00000297338Re-query CCDS DB by Protein ID:ENSP00000297338
Original member Current member EBI ENST00000517485.6 ENSP00000427923.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517485.6Link to Ensembl Protein Viewer:ENSP00000427923.2Re-query CCDS DB by Nucleotide ID:ENST00000517485Re-query CCDS DB by Protein ID:ENSP00000427923
Original member Current member EBI ENST00000522699.2 ENSP00000428158.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522699.2Link to Ensembl Protein Viewer:ENSP00000428158.2Re-query CCDS DB by Nucleotide ID:ENST00000522699Re-query CCDS DB by Protein ID:ENSP00000428158
Original member Current member EBI ENST00000520992.6 ENSP00000429342.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520992.6Link to Ensembl Protein Viewer:ENSP00000429342.2Re-query CCDS DB by Nucleotide ID:ENST00000520992Re-query CCDS DB by Protein ID:ENSP00000429342
Original member Current member EBI ENST00000517749.2 ENSP00000430273.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517749.2Link to Ensembl Protein Viewer:ENSP00000430273.2Re-query CCDS DB by Nucleotide ID:ENST00000517749Re-query CCDS DB by Protein ID:ENSP00000430273
Original member Current member EBI ENST00000519837.6 ENSP00000430524.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519837.6Link to Ensembl Protein Viewer:ENSP00000430524.2Re-query CCDS DB by Nucleotide ID:ENST00000519837Re-query CCDS DB by Protein ID:ENSP00000430524
Original member Current member EBI ENST00000687358.1 ENSP00000509687.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687358.1Link to Ensembl Protein Viewer:ENSP00000509687.1Re-query CCDS DB by Nucleotide ID:ENST00000687358Re-query CCDS DB by Protein ID:ENSP00000509687
Original member Current member NCBI NM_006265.3 NP_006256.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006265.3Link to Protein Sequence:NP_006256.1Re-query CCDS DB by Nucleotide ID:NM_006265Re-query CCDS DB by Protein ID:NP_006256Link to BLAST:NP_006256.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006256.1 631 O60216 631 100% 0 0

Chromosomal Locations for CCDS 6321.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 116847500 116847691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116848946 116849029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116850618 116850767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116851948 116852096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116852549 116852708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116854245 116854468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116856166 116856288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116856646 116856771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116857267 116857473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116858352 116858458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116861841 116861940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116863130 116863259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116866586 116866729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGTTCTACGCACATTTTGTTCTCAGTAAAAGAGGGCCTCTGGCCAAAATTTGGCTAGCGGCCCATTGGG
ATAAGAAGCTAACCAAAGCCCATGTGTTCGAGTGTAATTTAGAGAGCAGCGTGGAGAGTATCATCTCACC
AAAGGTGAAAATGGCATTACGGACATCAGGACATCTCTTACTGGGAGTAGTTCGAATCTATCACAGGAAA
GCCAAATACCTTCTTGCAGACTGTAATGAAGCATTCATTAAGATAAAGATGGCTTTTCGGCCAGGTGTGG
TTGACCTGCCTGAGGAAAATCGGGAAGCAGCTTATAATGCCATTACTTTACCTGAAGAATTTCATGACTT
TGATCAGCCACTGCCTGACTTAGATGACATCGATGTGGCCCAGCAGTTCAGCTTGAATCAGAGTAGAGTG
GAAGAGATAACCATGAGAGAAGAAGTTGGGAACATCAGTATTTTACAAGAAAATGATTTTGGTGATTTTG
GAATGGATGATCGTGAGATAATGAGAGAAGGCAGTGCTTTTGAGGATGACGACATGTTAGTAAGCACTAC
TACTTCTAACCTCCTATTAGAGTCTGAACAGAGCACCAGCAATCTGAATGAGAAAATTAACCATTTAGAA
TATGAAGATCAATATAAGGATGATAATTTTGGAGAAGGAAATGATGGTGGAATATTAGATGACAAACTTA
TTAGTAATAATGATGGCGGTATCTTTGATGATCCCCCTGCCCTCTCTGAGGCAGGGGTGATGTTGCCAGA
GCAGCCTGCACATGACGATATGGATGAGGATGATAATGTATCAATGGGTGGGCCTGATAGTCCTGATTCA
GTGGATCCCGTTGAACCAATGCCAACCATGACTGATCAAACAACACTTGTTCCAAATGAGGAAGAAGCAT
TTGCATTGGAGCCTATTGATATAACTGTTAAAGAAACAAAAGCCAAGAGGAAGAGGAAGCTAATTGTTGA
CAGTGTCAAAGAGTTGGATAGCAAGACAATTAGAGCCCAACTTAGTGATTATTCAGATATTGTTACTACT
TTGGATCTGGCACCGCCCACCAAGAAATTGATGATGTGGAAAGAGACAGGAGGAGTAGAAAAACTGTTTT
CTTTACCTGCTCAGCCTTTGTGGAATAACAGACTACTGAAGCTCTTTACACGCTGTCTTACACCGCTTGT
ACCAGAAGACCTTAGAAAAAGGAGGAAAGGAGGAGAGGCAGATAATTTGGATGAATTCCTCAAAGAATTT
GAAAATCCAGAGGTTCCTAGAGAGGACCAGCAACAGCAGCATCAGCAGCGTGATGTTATCGATGAGCCCA
TTATTGAAGAGCCAAGCCGCCTCCAGGAGTCAGTGATGGAGGCCAGCAGAACAAACATAGATGAGTCAGC
TATGCCTCCACCACCACCTCAGGGAGTTAAGCGAAAAGCTGGACAAATTGACCCAGAGCCTGTGATGCCT
CCTCAGCAGGTAGAGCAGATGGAAATACCACCTGTAGAGCTTCCCCCAGAAGAACCTCCAAATATCTGTC
AGCTAATACCAGAGTTAGAACTTCTGCCAGAAAAAGAGAAGGAGAAAGAGAAGGAAAAAGAAGATGATGA
AGAGGAAGAGGATGAAGATGCATCAGGGGGCGATCAAGATCAGGAAGAAAGAAGATGGAACAAAAGGACT
CAGCAGATGCTTCATGGTCTTCAGCGTGCTCTTGCTAAAACTGGAGCTGAATCTATCAGTTTGCTTGAGT
TATGTCGAAATACGAACAGAAAACAAGCTGCCGCAAAGTTCTACAGCTTCTTGGTTCTTAAAAAGCAGCA
AGCTATTGAGCTGACACAGGAAGAACCGTACAGTGACATCATCGCAACACCTGGACCAAGGTTCCATATT
ATATAA

Translation (631 aa):
MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLLLGVVRIYHRK
AKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQPLPDLDDIDVAQQFSLNQSRV
EEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDDDMLVSTTTSNLLLESEQSTSNLNEKINHLE
YEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDS
VDPVEPMPTMTDQTTLVPNEEEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTT
LDLAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEF
ENPEVPREDQQQQHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRKAGQIDPEPVMP
PQQVEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEEDEDASGGDQDQEERRWNKRT
QQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPRFHI
I


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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