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Report for CCDS62885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62885.1 Public Homo sapiens 2 SUPT7L 24 110 108 CCDS HistoryNCBI Gene:9913Re-query CCDS DB by CCDS ID:62885.1Re-query CCDS DB by GeneID:9913See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62885.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405491.5 ENSP00000384469.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405491.5Link to Ensembl Protein Viewer:ENSP00000384469.1Re-query CCDS DB by Nucleotide ID:ENST00000405491Re-query CCDS DB by Protein ID:ENSP00000384469
Original member Current member EBI ENST00000406540.5 ENSP00000385436.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406540.5Link to Ensembl Protein Viewer:ENSP00000385436.1Re-query CCDS DB by Nucleotide ID:ENST00000406540Re-query CCDS DB by Protein ID:ENSP00000385436
Original member Current member EBI ENST00000464789.2 ENSP00000441110.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000464789.2Link to Ensembl Protein Viewer:ENSP00000441110.1Re-query CCDS DB by Nucleotide ID:ENST00000464789Re-query CCDS DB by Protein ID:ENSP00000441110
Original member Current member NCBI NM_001282730.2 NP_001269659.1 Accepted alive Link to Nucleotide Sequence:NM_001282730.2Link to Protein Sequence:NP_001269659.1Re-query CCDS DB by Nucleotide ID:NM_001282730Re-query CCDS DB by Protein ID:NP_001269659Link to BLAST:NP_001269659.1
Original member Current member NCBI NM_001282731.2 NP_001269660.1 Accepted alive Link to Nucleotide Sequence:NM_001282731.2Link to Protein Sequence:NP_001269660.1Re-query CCDS DB by Nucleotide ID:NM_001282731Re-query CCDS DB by Protein ID:NP_001269660Link to BLAST:NP_001269660.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269659.1 412 O94864-2 412 100% 0 0
NP_001269660.1 412 O94864-2 412 100% 0 0

Chromosomal Locations for CCDS 62885.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27653485 27653747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27655365 27655602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27657345 27657669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27660984 27661396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGTTGAGATACTGGGGAGAGATACCAATATCATCAAGCCAGACCAACAGAAGTTCCTTCGATTTGCTCC
CACGGGAGTTCCGTCTGGTGGAAGTCCATGACCCACCCCTGCACCAACCCTCAGCCAACAAGCCGAAGCC
CCCCACTATGCTGGACATCCCCTCAGAGCCATGTAGTCTCACCATCCATACGATTCAGTTGATTCAGCAC
AACCGACGTCTTCGCAACCTTATTGCCACAGCTCAGGCCCAGAATCAGCAGCAGACAGAAGGTGTAAAAA
CTGAAGAGAGTGAACCTCTTCCCTCGTGCCCTGGGTCACCTCCTCTCCCTGATGACCTCCTGCCTTTAGA
TTGTAAGAATCCCAATGCACCATTCCAGATCCGGCACAGTGACCCAGAGAGTGACTTTTATCGTGGGAAA
GGGGAACCTGTGACTGAACTCAGCTGGCACTCCTGTCGGCAGCTCCTCTACCAGGCAGTGGCCACAATCC
TGGCCCACGCGGGCTTTGACTGTGCTAATGAGAGTGTCCTGGAGACCCTAACTGATGTGGCACATGAGTA
TTGCCTTAAGTTTACCAAGTTGCTGCGTTTTGCTGTGGACCGGGAGGCCCGGCTGGGACAGACTCCTTTT
CCTGATGTGATGGAGCAGGTATTCCATGAAGTGGGTATTGGCAGTGTGCTCTCCCTCCAGAAGTTCTGGC
AGCACCGCATCAAGGACTATCACAGTTACATGCTACAGATTAGTAAGCAACTCTCTGAAGAATATGAAAG
GATTGTCAATCCTGAGAAGGCCACAGAGGACGCTAAACCTGTGAAGATCAAGGAGGAACCTGTGAGCGAC
ATCACTTTTCCTGTCAGTGAGGAGCTGGAGGCTGACCTTGCTTCTGGAGACCAGTCACTGCCTATGGGAG
TGCTTGGGGCTCAGAGCGAACGCTTCCCATCTAACCTGGAGGTTGAAGCTTCACCACAGGCTTCAAGTGC
AGAGGTAAATGCTTCTCCTCTTTGGAATCTGGCCCATGTGAAAATGGAGCCTCAAGAAAGTGAAGAAGGC
AATGTCTCTGGGCATGGTGTGCTGGGCAGTGATGTCTTCGAGGAGCCTATGTCAGGCATGAGTGAAGCTG
GGATTCCTCAGAGCCCTGATGACTCAGATAGCAGCTATGGTTCCCACTCCACTGACAGCCTCATGGGGTC
CTCCCCTGTTTTCAACCAGCGCTGCAAGAAGAGGATGAGGAAAATATAA

Translation (412 aa):
MLRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPCSLTIHTIQLIQH
NRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDCKNPNAPFQIRHSDPESDFYRGK
GEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLETLTDVAHEYCLKFTKLLRFAVDREARLGQTPF
PDVMEQVFHEVGIGSVLSLQKFWQHRIKDYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSD
ITFPVSEELEADLASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEG
NVSGHGVLGSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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