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Report for CCDS62858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62858.1 Public Homo sapiens 2 E2F6 24 110 108 CCDS HistoryNCBI Gene:1876Re-query CCDS DB by CCDS ID:62858.1Re-query CCDS DB by GeneID:1876See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 62858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000546212.2 ENSP00000438864.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546212.2Link to Ensembl Protein Viewer:ENSP00000438864.1Re-query CCDS DB by Nucleotide ID:ENST00000546212Re-query CCDS DB by Protein ID:ENSP00000438864
Original member Current member EBI ENST00000542100.5 ENSP00000446315.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542100.5Link to Ensembl Protein Viewer:ENSP00000446315.1Re-query CCDS DB by Nucleotide ID:ENST00000542100Re-query CCDS DB by Protein ID:ENSP00000446315
Original member Current member NCBI NM_001278276.2 NP_001265205.1 Accepted alive Link to Nucleotide Sequence:NM_001278276.2Link to Protein Sequence:NP_001265205.1Re-query CCDS DB by Nucleotide ID:NM_001278276Re-query CCDS DB by Protein ID:NP_001265205Link to BLAST:NP_001265205.1
Original member Current member NCBI NM_001278277.2 NP_001265206.1 Accepted alive Link to Nucleotide Sequence:NM_001278277.2Link to Protein Sequence:NP_001265206.1Re-query CCDS DB by Nucleotide ID:NM_001278277Re-query CCDS DB by Protein ID:NP_001265206Link to BLAST:NP_001265206.1
Original member Current member NCBI NM_001278278.2 NP_001265207.1 Accepted alive Link to Nucleotide Sequence:NM_001278278.2Link to Protein Sequence:NP_001265207.1Re-query CCDS DB by Nucleotide ID:NM_001278278Re-query CCDS DB by Protein ID:NP_001265207Link to BLAST:NP_001265207.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265205.1 206 O75461-2 206 100% 0 0
NP_001265206.1 206 O75461-2 206 100% 0 0
NP_001265207.1 206 O75461-2 206 100% 0 0

Chromosomal Locations for CCDS 62858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11446477 11446523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11447627 11447774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11450012 11450126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11451651 11451806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11453582 11453736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGATCTTGTCAGATCTGCTCCCGGGGGTATTCTTGACTTAAACAAGGTTGCAACGAAACTGGGAGTCC
GAAAGCGGAGAGTGTATGACATCACCAATGTCTTAGATGGAATCGACCTCGTTGAAAAGAAATCCAAGAA
CCATATTAGATGGATAGGATCTGATCTTAGCAATTTTGGAGCAGTTCCCCAACAAAAGAAGCTACAGGAG
GAACTTTCTGACTTATCAGCAATGGAAGATGCTTTGGATGAGTTAATTAAGGATTGTGCTCAGCAGCTGT
TTGAGTTAACAGATGACAAAGAAAATGAAAGACTAGCATATGTGACCTATCAAGACATTCATAGCATTCA
GGCCTTCCATGAACAGATCGTCATTGCAGTTAAAGCTCCAGCAGAAACCAGATTGGATGTTCCAGCTCCC
AGAGAAGACTCTATCACAGTGCACATAAGGAGCACCAACGGACCTATCGATGTCTATTTGTGTGAAGTGG
AGCAGGGTCAGACCAGTAACAAAAGGTCTGAAGGTGTCGGGACCTCTTCATCTGAGAGCACTCATCCAGA
AGGCCCTGAGGAAGAAGAAAATCCTCAGCAAAGTGAAGAATTGCTTGAAGTAAGCAACTGA

Translation (206 aa):
MDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKKSKNHIRWIGSDLSNFGAVPQQKKLQE
ELSDLSAMEDALDELIKDCAQQLFELTDDKENERLAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAP
REDSITVHIRSTNGPIDVYLCEVEQGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLEVSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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