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Report for CCDS62382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62382.1 Public Homo sapiens 18 EPB41L3 24 110 108 CCDS HistoryNCBI Gene:23136Re-query CCDS DB by CCDS ID:62382.1Re-query CCDS DB by GeneID:23136See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 62382.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544123.5 ENSP00000441174.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544123.5Link to Ensembl Protein Viewer:ENSP00000441174.1Re-query CCDS DB by Nucleotide ID:ENST00000544123Re-query CCDS DB by Protein ID:ENSP00000441174
Original member Current member NCBI NM_001281533.2 NP_001268462.1 Accepted alive Link to Nucleotide Sequence:NM_001281533.2Link to Protein Sequence:NP_001268462.1Re-query CCDS DB by Nucleotide ID:NM_001281533Re-query CCDS DB by Protein ID:NP_001268462Link to BLAST:NP_001268462.1
Original member Current member NCBI NM_001384682.1 NP_001371611.1 Accepted alive Link to Nucleotide Sequence:NM_001384682.1Link to Protein Sequence:NP_001371611.1Re-query CCDS DB by Nucleotide ID:NM_001384682Re-query CCDS DB by Protein ID:NP_001371611Link to BLAST:NP_001371611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268462.1 883 Q9Y2J2-4 883 100% 0 0
NP_001371611.1 883 Q9Y2J2-4 883 100% 0 0

Chromosomal Locations for CCDS 62382.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 5393473 5393478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5395067 5395147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5395609 5395707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5396201 5396332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5397058 5397426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5398021 5398143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5406777 5406968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5407701 5407736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5410566 5410619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5419711 5419931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5423378 5423553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5424262 5424359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5428313 5428465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5433469 5433556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5433903 5434121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5438035 5438110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5443838 5443880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5445140 5445244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5478241 5478438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5489001 5489183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2652 nt):
ATGACGACCGAATCTGGATCAGACTCGGAATCCAAGCCGGACCAGGAGGCCGAGCCCCAGGAGGCGGCGG
GG
GCGCAGGGGCGCGCGGGGGCGCCCGTGCCGGAGCCGCCCAAGGAGGAGCAGCAGCAGGCCCTGGAGCA
G
TTCGCCGCCGCTGCAGCGCACAGCACCCCGGTGCGGAGGGAGGTCACTGACAAGGAACAGGAGTTTGCT
GCC
AGGGCTGCAAAACAGCTCGAATATCAGCAATTAGAAGACGATAAACTTTCTCAGAAATCATCTAGCA
GT
AAACTCTCTCGGTCTCCATTAAAGATTGTCAAAAAGCCTAAAAGCATGCAGTGCAAAGTGATACTTCT
C
GATGGATCAGAATATACCTGTGATGTAGAGAAACGCTCCAGAGGACAAGTGCTGTTTGATAAAGTGTGT
GAA
CACTTGAACTTGCTAGAGAAAGACTACTTTGGGCTTACGTATCGAGATGCTGAAAACCAGAAGAATT
GG
TTGGACCCTGCTAAGGAAATAAAAAAACAGGTTCGAAGTGGTGCTTGGCACTTTTCATTTAATGTGAA
A
TTTTATCCACCAGACCCTGCCCAACTATCTGAAGATATCACCAGGTACTACCTCTGCTTGCAGTTGCGA
GAT
GACATCGTGTCCGGAAGGCTGCCCTGCTCCTTTGTTACCCTGGCCTTGCTGGGCTCCTACACTGTCC
AG
TCAGAGCTCGGAGACTATGACCCAGATGAATGTGGGAGCGATTACATTAGTGAGTTCCGCTTTGCACC
A
AACCACACTAAAGAACTGGAAGACAAAGTGATCGAGCTGCACAAGAGCCACAGAGGAATGACGCCAGCA
GAA
GCAGAGATGCATTTCTTGGAAAATGCCAAAAAATTATCAATGTATGGGGTAGATTTACATCATGCTA
AG
GACTCAGAAGGGGTAGAAATTATGTTAGGAGTTTGTGCAAGTGGTCTGTTGATATATCGCGACCGGCT
G
CGAATAAACAGATTTGCCTGGCCCAAGGTTCTAAAGATTTCATACAAACGGAACAACTTTTACATTAAG
ATC
CGGCCGGGAGAGTTTGAACAATTTGAAAGCACCATTGGGTTTAAGCTGCCAAACCATCGAGCTGCCA
AG
CGTTTATGGAAAGTATGTGTTGAGCATCATACATTTTTCAGACTACTGTTACCAGAAGCACCTCCCAA
G
AAATTCCTAACCTTGGGTTCCAAGTTTCGTTATAGTGGCAGGACACAAGCGCAAACGAGAAGAGCCAGT
GCG
TTGATAGATCGCCCAGCACCTTACTTTGAACGCTCATCCAGCAAACGTTATACCATGTCTCGCAGCT
TG
GATGGAGCATCAGTGAATGAAAACCATGAAATATACATGAAGGATTCTATGTCTGCTGCAGAGGTTGG
T
ACTGGCCAGTACGCCACAACAAAAGGCATCTCTCAGACCAACTTGATCACCACTGTGACTCCGGAGAAG
AAG
GCTGAGGAGGAGCGGGACGAGGAAGAGGACAAACGGAGGAAGGGGGAAGAAGTCACGCCCATCTCGG
CC
ATCCGGCACGAGGGAAAGACTGACAGTGAGCGCACGGACACCGCAGCCGACGGGGAGACCACTGCCAC
T
GAGTCGGACCAGGAGGAAGATGCAGAGCTCAAGGCACAGGAGCTAGAAAAAACTCAAGATGACCTGATG
AAA
CATCAAACCAACATTAGCGAGCTGAAAAGAACCTTCTTAGAAACCTCAACAGACACTGCCGTAACGA
AT
GAATGGGAGAAGAGGCTTTCCACCTCCCCCGTGCGACTGGCCGCCAGGCAGGAGGATGCCCCCATGAT
C
GAACCACTTGTCCCTGAAGAGACTAAGCAGTCTTCTGGGGAAAAGCTCATGGATGGCTCTGAAATCTTC
AGT
TTATTAGAGTCTGCGCGAAAACCAACAGAATTCATAGGAGGGGTTACTTCTACTTCTCAAAGCTGGG
TT
CAGAAAATGGAAACCAAGACGGAGTCCAGTGGAATAGAGACGGAACCCACCGTGCACCACCTGCCGCT
T
AGCACTGAGAAGGTGGTGCAGGAGACCGTGTTGGTGGAGGAGCGGCGTGTGGTGCACGCGAGTGGGGAT
GCT
TCTTACTCGGCGGGAGACAGCGGGGATGCTGCAGCACAGCCCGCATTCACAGGCATTAAAGGGAAAG
AG
GGCTCTGCCTTGACGGAGGGGGCTAAAGAGGAAGGAGGGGAGGAGGTCGCTAAAGCTGTCCTGGAACA
G
GAAGAGACAGCCGCTGCTTCCCGTGAGCGACAAGAGGAGCAGAGTGCAGCCATCCACATTTCAGAAACT
TTG
GAACAAAAACCTCATTTTGAGTCCTCAACGGTGAAGACGGAAACCATCAGTTTTGGCAGTGTTTCAC
CG
GGAGGAGTAAAGCTAGAAATTTCCACGAAGGAAGTGCCAGTAGTTCACACCGAAACCAAAACCATCAC
A
TATGAATCATCACAGGTCGATCCAGGCACAGATCTGGAGCCAGGCGTGCTGATGAGTGCACAGACGATC
ACA
TCTGAAACCACCAGTACCACCACCACTACGCACATCACCAAAACTGTGAAAGGGGGCATTTCAGAGA
CA
AGAATTGAGAAGCGAATAGTCATCACGGGGGATGCAGACATTGACCATGACCAGGAATAA


Translation (883 aa):
MTTESGSDSESKPDQEAEPQEAAGAQGRAGAPVPEPPKEEQQQALEQFAAAAAHSTPVRREVTDKEQEFA
A
RAAKQLEYQQLEDDKLSQKSSSSKLSRSPLKIVKKPKSMQCKVILLDGSEYTCDVE
KRSRGQVLFDKVC
E
HLNLLEKDYFGLTYRDAENQK
NWLDPAKEIKKQVRSGAWHFSFNVKFYPPDPAQLSEDITRYYLCLQLR
D
DIVSGRLPCSFVTLALLGSYTVQSELGDYDPDECGSDYISEFRFAPNHTKELEDKVIELHKSH
RGMTPA
E
AEMHFLENAKKLSMYGVDLHHAK
DSEGVEIMLGVCASGLLIYRDRLRINRFAWPKVLKISYKRNNFYIK
I
RPGE
FEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFRLLLPEAPPKKFLTLGSKFRYSGRTQAQTRRAS
A
LIDRPAPYFERSSSKRYTMSRSLDG
ASVNENHEIYMKDSMSAAEVGTGQYATTKGISQTNLITTVTPEK
K
AEEERDEEEDKRRKGEEVTPISAIRHEGK
TDSERTDTAADGETTATESDQEEDAELKAQELEKTQDDLM
K
HQTNISELKRTFLETSTDTAVTNEWEKRLSTSPVRLAARQEDAPMIEPLVPEE
TKQSSGEKLMDGSEIF
S
LLESARKPTEFIGGVTSTSQSWVQ
KMETKTESSGIETEPTVHHLPLSTEKVVQETVLVEERRVVHASGD
A
SYSAGDSGDAAAQPAFTGIKGKEGSALTEGAKEEGGEEVAKAVLEQEETAAASRERQEEQSAAIHISET
L
EQKPHFE
SSTVKTETISFGSVSPGGVKLEISTKEVPVVHTETKTITYESSQVDPGTDLEPGVLMSAQTI
T
SETTSTTTTTHITK
TVKGGISETRIEKRIVITGDADIDHDQE



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser