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Report for CCDS62232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62232.1 Public Homo sapiens 17 CDK5RAP3 24 110 108 CCDS HistoryNCBI Gene:80279Re-query CCDS DB by CCDS ID:62232.1Re-query CCDS DB by GeneID:80279See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62232.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536708.6 ENSP00000438886.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536708.6Link to Ensembl Protein Viewer:ENSP00000438886.2Re-query CCDS DB by Nucleotide ID:ENST00000536708Re-query CCDS DB by Protein ID:ENSP00000438886
Original member Current member NCBI NM_001278197.2 NP_001265126.1 Accepted alive Link to Nucleotide Sequence:NM_001278197.2Link to Protein Sequence:NP_001265126.1Re-query CCDS DB by Nucleotide ID:NM_001278197Re-query CCDS DB by Protein ID:NP_001265126Link to BLAST:NP_001265126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265126.1 531 Q96JB5-4 531 100% 0 0

Chromosomal Locations for CCDS 62232.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47970643 47970723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47971362 47971407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47973519 47973650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47973931 47974031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47974400 47974448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47975159 47975337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47975514 47975653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47975869 47976013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47976712 47976822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47977832 47977910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47978829 47978917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47980593 47980798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47981163 47981334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47981437 47981502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGAGGAGGCAAAGCATGACAAGTGCCACAAGAGACCTGCACACTGCTCTGGATGGTAAAGCGACGCAAG
GAGGGAAGAAGGACCATCAGCACGTGCCCATCGACATCCAGACCAGCAAGCTGCTCGATTGGCTGGTGGA
CAGAAGGCACTGCAGCCTGAAATGGCAGAGTCTGGTGCTGACGATCCGCGAGAAGATCAATGCTGCCATC
CAGGACATGCCAGAGAGCGAAGAGATCGCCCAGCTGCTGTCTGGGTCCTACATTCACTACTTTCACTGCC
TAAGAATCCTGGACCTTCTCAAAGGCACAGAGGCCTCCACGAAGAATATTTTTGGCCGATACTCTTCACA
GCGGATGAAGGATTGGCAGGAGATTATAGCTCTGTATGAGAAGGACAACACCTACTTAGTGGAACTCTCT
AGCCTCCTGGTTCGGAATGTCAACTATGAGATCCCCTCACTGAAGAAGCAGATTGCCAAGTGCCAGCAGC
TGCAGCAAGAATACAGCCGCAAGGAGGAGGAGTGCCAGGCAGGGGCTGCCGAGATGCGGGAGCAGTTCTA
CCACTCCTGCAAGCAGTATGGCATCACGGGCGAAAATGTCCGAGGAGAACTGCTGGCCCTGGTGAAGGAC
CTGCCGAGTCAGCTGGCTGAGATTGGGGCAGCGGCTCAGCAGTCCCTGGGGGAAGCCATTGACGTGTACC
AGGCGTCTGTGGGGTTTGTGTGTGAGAGCCCCACAGAGCAGGTGTTGCCAATGCTGCGGTTCGTGCAGAA
GCGGGGAAACTCAACGGTGTACGAGTGGAGGACAGGGACAGAGCCCTCTGTGGTGGAACGACCCCACCTC
GAGGAGCTTCCTGAGCAGGTGGCAGAAGATGCGATTGACTGGGGCGACTTTGGGGTAGAGGCAGTGTCTG
AGGGGACTGACTCTGGCATCTCTGCCGAGGCTGCTGGAATCGACTGGGGCATCTTCCCGGAATCAGATTC
AAAGGATCCTGGAGGTGATGGGATAGACTGGGGAGACGATGCTGTTGCTTTGCAGATCACAGTGCTGGAA
GCAGGAACCCAGGCTCCAGAAGGTGTTGCCAGGGGCCCAGATGCCCTGACACTGCTTGAATACACTGAGA
CCCGGAATCAGTTCCTTGATGAGCTCATGGAGCTTGAGATCTTCTTAGCCCAGAGAGCAGTGGAGTTGAG
TGAGGAGGCAGATGTCCTGTCTGTGAGCCAGTTCCAGCTGGCTCCAGCCATCCTGCAGGGCCAGACCAAA
GAGAAGATGGTTACCATGGTGTCAGTGCTGGAGGATCTGATTGGCAAGCTTACCAGTCTTCAGCTGCAAC
ACCTGTTTATGATCCTGGCCTCACCAAGGTATGTGGACCGAGTGACTGAATTCCTCCAGCAAAAGCTGAA
GCAGTCCCAGCTGCTGGCTTTGAAGAAAGAGCTGATGGTGCAGAAGCAGCAGGAGGCACTTGAGGAGCAG
GCGGCTCTGGAGCCTAAGCTGGACCTGCTACTGGAGAAGACCAAGGAGCTGCAGAAGCTGATTGAAGCTG
ACATCTCCAAGAGGTACAGCGGGCGCCCTGTGAACCTGATGGGAACCTCTCTGTGA

Translation (531 aa):
MRRQSMTSATRDLHTALDGKATQGGKKDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAI
QDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQEIIALYEKDNTYLVELS
SLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELLALVKD
LPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHL
EELPEQVAEDAIDWGDFGVEAVSEGTDSGISAEAAGIDWGIFPESDSKDPGGDGIDWGDDAVALQITVLE
AGTQAPEGVARGPDALTLLEYTETRNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPAILQGQTK
EKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALEEQ
AALEPKLDLLLEKTKELQKLIEADISKRYSGRPVNLMGTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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