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Report for CCDS6207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6207.1 Public Homo sapiens 8 TRAM1 24 110 108 CCDS HistoryNCBI Gene:23471Re-query CCDS DB by CCDS ID:6207.1Re-query CCDS DB by GeneID:23471See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6207.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262213.7 ENSP00000262213.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262213.7Link to Ensembl Protein Viewer:ENSP00000262213.2Re-query CCDS DB by Nucleotide ID:ENST00000262213Re-query CCDS DB by Protein ID:ENSP00000262213
Original member Current member NCBI NM_014294.6 NP_055109.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014294.6Link to Protein Sequence:NP_055109.1Re-query CCDS DB by Nucleotide ID:NM_014294Re-query CCDS DB by Protein ID:NP_055109Link to BLAST:NP_055109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055109.1 374 Q15629-1 374 100% 0 0

Chromosomal Locations for CCDS 6207.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70574932 70575005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70583164 70583324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70583650 70583793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70586895 70586999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70587106 70587176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70594506 70594590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70596263 70596321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70597895 70598011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70598134 70598255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70600019 70600082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70608077 70608199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGCGATTCGCAAGAAAAGCACCAAGAGCCCCCCAGTGCTGAGCCACGAATTCGTCCTGCAGAATCACG
CGGACATCGTCTCCTGTGTGGCGATGGTCTTCCTGCTGGGGCTCATGTTTGAGATAACGGCAAAAGCTTC
TATCATTTTTGTTACTCTTCAGTACAATGTCACCCTCCCAGCAACAGAAGAACAAGCTACTGAATCAGTG
TCCCTTTATTACTATGGCATCAAAGATTTGGCTACTGTTTTCTTCTACATGCTAGTGGCGATAATTATTC
ATGCCGTAATTCAAGAGTATATGTTGGATAAAATTAACAGGCGAATGCACTTCTCCAAAACAAAACACAG
CAAGTTTAATGAATCTGGTCAGCTTAGTGCGTTCTACCTTTTTGCCTGTGTTTGGGGCACATTCATTCTC
ATCTCTGAAAACTACATCTCAGACCCAACTATCTTATGGAGGGCTTATCCCCATAACCTGATGACATTTC
AAATGAAGTTTTTCTACATATCACAGCTGGCTTACTGGCTTCATGCTTTTCCTGAACTCTACTTCCAGAA
AACCAAAAAAGAAGATATTCCTCGTCAGCTTGTCTACATTGGTCTTTACCTCTTCCACATTGCTGGAGCT
TACCTTTTGAACTTGAATCATCTAGGACTTGTTCTTCTGGTGCTACATTATTTTGTTGAATTTCTTTTCC
ACATTTCCCGCCTGTTTTATTTTAGCAATGAAAAGTATCAGAAAGGATTTTCTCTGTGGGCAGTTCTTTT
TGTTTTGGGAAGACTTCTGACTTTAATTCTTTCAGTACTGACTGTTGGTTTTGGCCTTGCAAGAGCAGAA
AATCAGAAGCTGGATTTCAGTACTGGAAACTTCAATGTGTTAGCTGTTAGAATCGCTGTTCTGGCATCCA
TTTGCGTTACTCAGGCATTTATGATGTGGAAGTTCATTAATTTTCAGCTTCGAAGGTGGAGGGAACATTC
TGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGGCAGATCTTCTAAAAAAGGAACA
GAAAATGGTGTGAATGGAACATTAACTTCAAATGTAGCAGACTCTCCCCGGAATAAAAAAGAGAAATCTT
CATAA

Translation (374 aa):
MAIRKKSTKSPPVLSHEFVLQNHADIVSCVAMVFLLGLMFEITAKASIIFVTLQYNVTLPATEEQATESV
SLYYYGIKDLATVFFYMLVAIIIHAVIQEYMLDKINRRMHFSKTKHSKFNESGQLSAFYLFACVWGTFIL
ISENYISDPTILWRAYPHNLMTFQMKFFYISQLAYWLHAFPELYFQKTKKEDIPRQLVYIGLYLFHIAGA
YLLNLNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLTVGFGLARAE
NQKLDFSTGNFNVLAVRIAVLASICVTQAFMMWKFINFQLRRWREHSAFQAPAVKKKPTVTKGRSSKKGT
ENGVNGTLTSNVADSPRNKKEKSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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