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Report for CCDS61892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61892.1 Public Homo sapiens 16 NPIPB6 24 110 108 CCDS HistoryNCBI Gene:728741Re-query CCDS DB by CCDS ID:61892.1Re-query CCDS DB by GeneID:728741See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000532254.1 ENSP00000431871.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532254.1Link to Ensembl Protein Viewer:ENSP00000431871.1Re-query CCDS DB by Nucleotide ID:ENST00000532254Re-query CCDS DB by Protein ID:ENSP00000431871
Original member Current member EBI ENST00000695563.1 ENSP00000512020.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000695563.1Link to Ensembl Protein Viewer:ENSP00000512020.1Re-query CCDS DB by Nucleotide ID:ENST00000695563Re-query CCDS DB by Protein ID:ENSP00000512020
Original member Current member NCBI NM_001282524.2 NP_001269453.1 Accepted alive Link to Nucleotide Sequence:NM_001282524.2Link to Protein Sequence:NP_001269453.1Re-query CCDS DB by Nucleotide ID:NM_001282524Re-query CCDS DB by Protein ID:NP_001269453Link to BLAST:NP_001269453.1
Original member Current member NCBI NM_001395275.1 NP_001382204.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395275.1Link to Protein Sequence:NP_001382204.1Re-query CCDS DB by Nucleotide ID:NM_001395275Re-query CCDS DB by Protein ID:NP_001382204Link to BLAST:NP_001382204.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269453.1 425 E9PJ23 425 100% 0 0
NP_001382204.1 425 E9PJ23 425 100% 0 0

Chromosomal Locations for CCDS 61892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28342607 28343188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28344548 28344583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28344693 28344753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28348834 28349029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28349142 28349241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28352879 28353061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28362703 28362822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGTGAAGCTCTCTATTGTCCTGACCCCACAGTTCCTGTCGCATGACCAGAGCCAGCTCACCAAGGAGC
TGCAGCAGCATGTAAAGTCAGTGACATGCCCATGCGAGTACCTGAGGAAGGTTATCAATAGTCTGGCTGT
CTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCA
TCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTAACATTC
TCTTCTGCACAAGTTGCCTTTGTGTGTCTTTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGG
ATCCATGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCAGTAGACAGAAAGGGCTGAGGTCCATTTGT
ATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCCTGAAAGACGTCATTACTCTAC
GGAGGCATGTGGAAACAAAAGTTAGAGCTAAAATCCGTAAGAGGAAGGTGACAACGAAAATCAACCGTCA
TGACAAAATCAATGGAAAGAGGAAGACCGCCAGAAAACAGAAAATGTTTCAACGTGCGCAAGAGTTGCGG
CGGCGGGCAGAGGACTACCACAAATGCAAAATCCCCCCTTCTGCAAGAAAGCCTCTTTGCAACTGGGTCA
GAATGGTGGCAGCGGAGCATCGTCATTCTTCAGGATTGCCCTACTGGCCCTACCTCACAGCTGAAACTTT
AAAAAACAGGATGGGCCGCCAGCCACCTCCTCCAACTCAACAACATTCTATAACTGATAACTCCCTGAGC
CTCAAGACACCTACTGAGTGTCTGCTCACTCCCCTTCCACCCTCAGTGGATGATAATATCAAGGAGTGTC
CTCTTGCTCCTCTTCCACCCTCTCCTCTTCCACCCTCAGTGGATGATAATCTGAAGGAATGTCTCTTTGT
CCCGCTTCCACCCTCTCCTCTTCCACCCTCAGTGGATGATAATCTCAAGACTCCTCCCTTAGCTACTCAG
GAGGCCGAGGTGGAAAAACCACCCAAACCCAAGAGGTGGAGGGTGGATGAGGTGGAACAATCACCGAAAC
CCAAGAGGCGGAGGGTGGATGAGGTGGAACAATCGCCCAAGCCCAAGAGGCAGAGGGAGGCCGAGGCACA
ACAATTACCCAAACCCAAGAGGCGGAGGTTGAGTAAGCTGAGAACACGCCATTGCACTCAAGCCTGGGCA
ATAAGAATAAATCCGTAG

Translation (425 aa):
MVKLSIVLTPQFLSHDQSQLTKELQQHVKSVTCPCEYLRKVINSLAVYRHRETDFGVGVRDHPGQHGKTP
SPQKLDNLIIIIIGFLRRYTFNILFCTSCLCVSFLKTIFWSRNGHDGSMDVQQRAWRSNRSRQKGLRSIC
MHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELR
RRAEDYHKCKIPPSARKPLCNWVRMVAAEHRHSSGLPYWPYLTAETLKNRMGRQPPPPTQQHSITDNSLS
LKTPTECLLTPLPPSVDDNIKECPLAPLPPSPLPPSVDDNLKECLFVPLPPSPLPPSVDDNLKTPPLATQ
EAEVEKPPKPKRWRVDEVEQSPKPKRRRVDEVEQSPKPKRQREAEAQQLPKPKRRRLSKLRTRHCTQAWA
IRINP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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