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Report for CCDS6165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6165.1 Public Homo sapiens 8 PLAG1 24 110 108 CCDS HistoryNCBI Gene:5324Re-query CCDS DB by CCDS ID:6165.1Re-query CCDS DB by GeneID:5324See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6165.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316981.8 ENSP00000325546.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316981.8Link to Ensembl Protein Viewer:ENSP00000325546.3Re-query CCDS DB by Nucleotide ID:ENST00000316981Re-query CCDS DB by Protein ID:ENSP00000325546
Original member Current member EBI ENST00000429357.2 ENSP00000416537.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429357.2Link to Ensembl Protein Viewer:ENSP00000416537.2Re-query CCDS DB by Nucleotide ID:ENST00000429357Re-query CCDS DB by Protein ID:ENSP00000416537
Original member Current member NCBI NM_001114634.2 NP_001108106.1 Accepted alive Link to Nucleotide Sequence:NM_001114634.2Link to Protein Sequence:NP_001108106.1Re-query CCDS DB by Nucleotide ID:NM_001114634Re-query CCDS DB by Protein ID:NP_001108106Link to BLAST:NP_001108106.1
Original member Current member NCBI NM_002655.3 NP_002646.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002655.3Link to Protein Sequence:NP_002646.2Re-query CCDS DB by Nucleotide ID:NM_002655Re-query CCDS DB by Protein ID:NP_002646Link to BLAST:NP_002646.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108106.1 500 Q6DJT9-1 500 100% 0 0
NP_002646.2 500 Q6DJT9-1 500 100% 0 0

Chromosomal Locations for CCDS 6165.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 56166243 56167503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56168028 56168269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGCCACTGTCATTCCTGGTGATTTGTCAGAAGTAAGAGATACCCAGAAAGTCCCTTCAGGGAAACGTA
AGCGTGGTGAAACCAAACCAAGAAAAAACTTTCCTTGCCAACTGTGTGACAAGGCCTTTAACAGTGTTGA
GAAATTAAAGGTTCACTCCTACTCTCACACAGGAGAGAGGCCCTACAAGTGCATACAACAAGACTGCACC
AAGGCCTTTGTTTCTAAGTACAAATTACAAAGGCACATGGCTACTCATTCTCCTGAGAAAACCCACAAGT
GTAATTATTGTGAGAAAATGTTTCACCGGAAAGATCATCTGAAGAATCACCTCCATACACACGACCCTAA
CAAAGAGACGTTTAAGTGCGAAGAATGTGGCAAGAACTACAATACCAAGCTTGGATTTAAACGTCACTTG
GCCTTGCATGCCGCAACAAGTGGTGACCTCACCTGTAAGGTATGTTTGCAAACTTTTGAAAGCACGGGAG
TGCTTCTGGAGCACCTTAAATCTCATGCAGGCAAGTCGTCTGGTGGGGTTAAAGAAAAAAAGCACCAGTG
CGAACATTGTGATCGCCGGTTCTACACCCGAAAGGATGTCCGGAGACACATGGTGGTGCACACTGGAAGA
AAGGACTTCCTCTGTCAGTATTGTGCACAGAGATTTGGGCGAAAGGATCACCTGACTCGACATATGAAGA
AGAGTCACAATCAAGAGCTTCTGAAGGTCAAAACAGAACCAGTGGATTTCCTTGACCCATTTACCTGCAA
TGTGTCTGTGCCTATAAAAGACGAGCTCCTTCCGGTGATGTCCTTACCTTCCAGTGAACTGTTATCAAAG
CCATTCACAAACACTTTGCAGTTAAACCTCTACAACACTCCATTTCAGTCCATGCAGAGCTCGGGATCTG
CCCACCAAATGATCACAACTTTACCTTTGGGAATGACATGCCCAATAGATATGGACACTGTTCATCCCTC
TCACCACCTTTCTTTCAAATATCCGTTCAGTTCTACCTCATATGCAATTTCTATTCCTGAAAAAGAACAG
CCATTAAAGGGGGAAATTGAGAGTTACCTGATGGAGTTACAAGGTGGCGTGCCCTCTTCATCCCAAGATT
CTCAAGCATCGTCATCATCTAAGCTAGGGTTGGATCCTCAGATTGGGTCCCTAGATGATGGTGCAGGAGA
CCTCTCCCTATCCAAAAGCTCTATCTCCATCAGTGACCCCCTAAACACACCAGCATTGGATTTTTCTCAG
TTGTTTAATTTCATACCTTTAAATGGTCCTCCCTATAATCCTCTATCAGTGGGGAGCCTTGGAATGAGCT
ATTCCCAGGAAGAAGCACATTCTTCTGTTTCCCAGCTCCCCCCACAAACACAGGATCTTCAGGATCCTGC
AAACACTATAGGGCTTGGGTCTCTGCACTCACTGTCAGCAGCTTTCACCAGCAGTTTAAGCACAAGTACC
ACCCTCCCACGTTTCCATCAAGCTTTTCAGTAG

Translation (500 aa):
MATVIPGDLSEVRDTQKVPSGKRKRGETKPRKNFPCQLCDKAFNSVEKLKVHSYSHTGERPYKCIQQDCT
KAFVSKYKLQRHMATHSPEKTHKCNYCEKMFHRKDHLKNHLHTHDPNKETFKCEECGKNYNTKLGFKRHL
ALHAATSGDLTCKVCLQTFESTGVLLEHLKSHAGKSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGR
KDFLCQYCAQRFGRKDHLTRHMKKSHNQELLKVKTEPVDFLDPFTCNVSVPIKDELLPVMSLPSSELLSK
PFTNTLQLNLYNTPFQSMQSSGSAHQMITTLPLGMTCPIDMDTVHPSHHLSFKYPFSSTSYAISIPEKEQ
PLKGEIESYLMELQGGVPSSSQDSQASSSSKLGLDPQIGSLDDGAGDLSLSKSSISISDPLNTPALDFSQ
LFNFIPLNGPPYNPLSVGSLGMSYSQEEAHSSVSQLPPQTQDLQDPANTIGLGSLHSLSAAFTSSLSTST
TLPRFHQAFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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