NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6148.1 Public Homo sapiens 8 PCMTD1 24 110 108 CCDS HistoryNCBI Gene:115294Re-query CCDS DB by CCDS ID:6148.1Re-query CCDS DB by GeneID:115294See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6148.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360540.9 ENSP00000353739.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360540.9Link to Ensembl Protein Viewer:ENSP00000353739.5Re-query CCDS DB by Nucleotide ID:ENST00000360540Re-query CCDS DB by Protein ID:ENSP00000353739
Original member Current member EBI ENST00000522514.6 ENSP00000428099.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000522514.6Link to Ensembl Protein Viewer:ENSP00000428099.1Re-query CCDS DB by Nucleotide ID:ENST00000522514Re-query CCDS DB by Protein ID:ENSP00000428099
Original member Current member NCBI NM_052937.4 NP_443169.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052937.4Link to Protein Sequence:NP_443169.2Re-query CCDS DB by Nucleotide ID:NM_052937Re-query CCDS DB by Protein ID:NP_443169Link to BLAST:NP_443169.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443169.2 357 Q96MG8-1 357 100% 0 0

Chromosomal Locations for CCDS 6148.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 51820351 51820718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51831444 51831567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51833518 51833689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51845661 51845763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51860845 51861151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAATTGATAATTTAAAAGAAGCTCAGTATA
TTCGTACTGAAAGAGTGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAGGCTACAG
AGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAACATCCACTTGTCAGCACCTTGCATTTATTCT
GAAGTTATGGAAGCATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGAACCGGATATT
TAAGTACAATGGTGGGCTTAATTTTAGGTCCTTTTGGAATAAATCATGGGATTGAGCTTCATTCAGATGT
GGTGGAATATGCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCTTTGATAAATTTGAGTTC
TGTGAACCTGCATTTGTTGTTGGTAATTGCCTCCAGATAGCTTCTGACAGTCATCAGTATGATCGAATTT
ATTGTGGAGCTGGAGTGCAGAAAGACCATGAAAACTACATGAAAATATTACTAAAAGTTGGAGGCATATT
AGTCATGCCTATAGAGGATCAGTTAACACAGATTATGCGAACTGGACAGAACACTTGGGAAAGTAAAAAT
ATCCTTGCTGTTTCATTTGCTCCACTTGTGCAACCAAGTAAGAATGATAATGGCAAACCAGATTCTGTGG
GACTCCCTCCCTGTGCTGTCAGGAATCTACAGGACTTGGCTCGTATTTACATTCGACGCACACTTAGAAA
TTTCATAAATGATGAGATGCAGGCCAAGGGGATTCCTCAAAGGGCTCCACCCAAAAGGAAAAGAAAGAGA
GTTAAACAGAGAATTAACACTTACGTATTTGTGGGTAATCAGCTTATTCCTCAGCCTCTAGACAGTGAAG
AGGATGAAAAAATGGAAGAGGATAACAAAGAAGAGGAGGAAAAAGATCACAATGAAGCAATGAAGCCAGA
GGAGCCACCTCAAAATTTACTGAGAGAAAAAATCATGAAGCTGCCCCTCCCTGAATCTTTAAAAGCTTAC
TTGACATATTTTAGAGACAAATAA

Translation (357 aa):
MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGNIHLSAPCIYS
EVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAKEKLESFIKNSDSFDKFEF
CEPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKILLKVGGILVMPIEDQLTQIMRTGQNTWESKN
ILAVSFAPLVQPSKNDNGKPDSVGLPPCAVRNLQDLARIYIRRTLRNFINDEMQAKGIPQRAPPKRKRKR
VKQRINTYVFVGNQLIPQPLDSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMKLPLPESLKAY
LTYFRDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH