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Report for CCDS6138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6138.1 Public Homo sapiens 8 RNF170 24 110 108 CCDS HistoryNCBI Gene:81790Re-query CCDS DB by CCDS ID:6138.1Re-query CCDS DB by GeneID:81790See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000527424.6 ENSP00000434797.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000527424.6Link to Ensembl Protein Viewer:ENSP00000434797.1Re-query CCDS DB by Nucleotide ID:ENST00000527424Re-query CCDS DB by Protein ID:ENSP00000434797
Original member Current member EBI ENST00000534961.5 ENSP00000445725.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534961.5Link to Ensembl Protein Viewer:ENSP00000445725.1Re-query CCDS DB by Nucleotide ID:ENST00000534961Re-query CCDS DB by Protein ID:ENSP00000445725
Original member Current member NCBI NM_001160223.2 NP_001153695.1 Accepted alive Link to Nucleotide Sequence:NM_001160223.2Link to Protein Sequence:NP_001153695.1Re-query CCDS DB by Nucleotide ID:NM_001160223Re-query CCDS DB by Protein ID:NP_001153695Link to BLAST:NP_001153695.1
Original member Current member NCBI NM_030954.4 NP_112216.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030954.4Link to Protein Sequence:NP_112216.3Re-query CCDS DB by Nucleotide ID:NM_030954Re-query CCDS DB by Protein ID:NP_112216Link to BLAST:NP_112216.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153695.1 258 Q96K19-1 258 100% 0 0
NP_112216.3 258 Q96K19-1 258 100% 0 0

Chromosomal Locations for CCDS 6138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 42856159 42856428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42861745 42861855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42865416 42865489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42870004 42870112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42873931 42874006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42887728 42887864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGGCCAAATATCAAGGTGAAGTTCAAAGTTTGAAACTGGATGATGATTCAGTTATAGAAGGAGTAAGCG
ACCAAGTACTTGTGGCAGTTGTGGTCAGTTTCGCTTTGATTGCTACCCTGGTATATGCACTTTTCAGAAA
TGTACATCAAAACATTCACCCAGAAAACCAGGAGCTAGTAAGGGTACTTCGAGAACAGCTTCAAACAGAA
CAGGATGCACCTGCTGCCACTCGACAGCAGTTCTACACTGACATGTACTGTCCCATCTGCCTGCACCAAG
CCTCCTTCCCGGTGGAGACCAACTGTGGACATCTTTTTTGTGGTGCCTGCATTATTGCTTACTGGCGATA
TGGTTCATGGCTTGGGGCAATCAGTTGTCCAATCTGTAGACAAACGGTAACCTTACTCCTAACAGTATTT
GGTGAAGATGATCAGTCTCAGGATGTTCTGAGATTGCATCAGGATATTAATGATTATAACCGGAGATTCT
CAGGGCAACCCAGATCTATTATGGAGAGAATTATGGATCTACCCACTTTACTGAGGCATGCATTCAGGGA
AATGTTTTCAGTCGGGGGCCTTTTCTGGATGTTTCGCATCAGGATAATACTTTGTTTAATGGGAGCTTTT
TTCTATCTTATATCACCTCTAGATTTTGTACCTGAAGCCTTGTTTGGAATTCTAGGCTTTCTAGATGATT
TCTTTGTCATCTTTTTATTGCTTATCTACATCTCTATTATGTATCGAGAAGTGATAACCCAAAGGCTAAC
TAGATGA

Translation (258 aa):
MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELVRVLREQLQTE
QDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVF
GEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIILCLMGAF
FYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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