NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS60930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60930.1 Public Homo sapiens 11 TRIM49D1 24 110 108 CCDS HistoryNCBI Gene:399939Re-query CCDS DB by CCDS ID:60930.1Re-query CCDS DB by GeneID:399939See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 60930.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420869.3 ENSP00000474678.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000420869.3Link to Ensembl Protein Viewer:ENSP00000474678.1Re-query CCDS DB by Nucleotide ID:ENST00000420869Re-query CCDS DB by Protein ID:ENSP00000474678
Original member Current member EBI ENST00000530311.6 ENSP00000474850.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530311.6Link to Ensembl Protein Viewer:ENSP00000474850.1Re-query CCDS DB by Nucleotide ID:ENST00000530311Re-query CCDS DB by Protein ID:ENSP00000474850
Original member Current member NCBI NM_001206627.2 NP_001193556.1 Accepted alive Link to Nucleotide Sequence:NM_001206627.2Link to Protein Sequence:NP_001193556.1Re-query CCDS DB by Nucleotide ID:NM_001206627Re-query CCDS DB by Protein ID:NP_001193556Link to BLAST:NP_001193556.1
Original member Current member NCBI NM_001384911.1 NP_001371840.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384911.1Link to Protein Sequence:NP_001371840.1Re-query CCDS DB by Nucleotide ID:NM_001384911Re-query CCDS DB by Protein ID:NP_001371840Link to BLAST:NP_001371840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193556.1 452 C9J1S8 452 100% 0 0
NP_001371840.1 452 C9J1S8 452 100% 0 0

Chromosomal Locations for CCDS 60930.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 89911587 89912086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89913204 89913301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89914175 89914197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89914912 89915142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89916919 89917014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89917300 89917710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGAATTCTGGAATCTCGCAAGTCTTCCAGAGGGAACTCACCTGCCCCATCTGCCTGAACTACTTCATAG
ACCCGGTCACCATAGACTGTGGGCACAGCTTTTGCAGGCCCTGTTTCTACCTCAACTGGCAAGACATCCC
AATTCTTACTCAGTGCTTTGAATGCCTAAAGACAACACAGCAGAGAAACCTCAAAACTAACATTCGATTG
AAGAAGATGGCTTCCCGTGCCAGAAAAGCCAGTCTCTGGCTATTCCTGAGCTCTGAGGAGCAAATGTGTG
GCACTCACAGGGAGACAAAGAAGATATTCTGTGAAGTGGACAGGAGCCTGCTCTGTTTGCTGTGCTCCAG
CTCTCTGGAGCACCGGTATCACAGACACTGTCCCGCTGAGTGGGCTGCTGAGGAACACCGGGAGAAGCTT
TTAAAGAAAATGCAGTCTTTATGGGAAAAAGTTTGTGAAAATCAGAGAAACCTGAACGTGGAAACCACCA
GAATCAGCCACTGGAAGGATTATGTGAATGTAAGGCTAGAAGCTATTAGAGCTGAGTATCAGAAGATGCC
TGCATTTCATCATGAAGAAGAAAAACATAATTTGGAGATGCTGAAAAAGAAGGGGAAAGATATTTTTCAT
CGACTTCATTTAAGTAAAGCCAAAATGGCTCACAGGAGGGAGATTTTAAGAGGAACGTATGCGGAGCTGA
TGAAAATGTGCCATAAACCAGATGTGGAGCTACTTCAGGCTTTTGGAGACATATTACACAGGAGTGAGTC
CGTGCTGCTGCACATGCCCCAGCCTCTGAATCTAGAGCTCAGGGCAGGGCCCATCACTGGACTGAGGGAC
AGGCTCAACCAATTCCGAGTGGATATTACTCTGCCTCATAATGAAGCCAACAGTCATATCTTCCGACGTG
GAGATTTGAGAAGCATTTGTATTGGATGTGACCGTCAAAATGCGCCCCATATCACTGCAACACCTACAAG
TTTTCTTGCATGGGGTGCTCAGACTTTCACCTCTGGCAAATATTACTGGGAGGTCCATGTGGGGGACTCT
TGGAATTGGGCCTTTGGTGTCTGTAATAAGTATTGGAAAGGGACGAATCAGAATGGCAATATACATGGAG
AGGAGGGACTCTTTAGTCTTGGGTGTGTTAAGAATGACATTCAGTGCAGCCTCTTTACCACCTCCCCACT
TACACTGCAGTATGTCCCAAGACCTACCAACCATGTAGGATTATTCCTGGATTGTGAAGCTAGAACTGTG
AGCTTCGTTGATGTTAATCAAAGCTCCCCTATACACACCATCCCTAATTGCTCCTTCTCACCTCCTCTCA
GGCCTATCTTTTGCTGTGTTCACCTCTGA

Translation (452 aa):
MNSGISQVFQRELTCPICLNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECLKTTQQRNLKTNIRL
KKMASRARKASLWLFLSSEEQMCGTHRETKKIFCEVDRSLLCLLCSSSLEHRYHRHCPAEWAAEEHREKL
LKKMQSLWEKVCENQRNLNVETTRISHWKDYVNVRLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKDIFH
RLHLSKAKMAHRREILRGTYAELMKMCHKPDVELLQAFGDILHRSESVLLHMPQPLNLELRAGPITGLRD
RLNQFRVDITLPHNEANSHIFRRGDLRSICIGCDRQNAPHITATPTSFLAWGAQTFTSGKYYWEVHVGDS
WNWAFGVCNKYWKGTNQNGNIHGEEGLFSLGCVKNDIQCSLFTTSPLTLQYVPRPTNHVGLFLDCEARTV
SFVDVNQSSPIHTIPNCSFSPPLRPIFCCVHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH