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Report for CCDS608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
608.1 Public Homo sapiens 1 OMA1 24 110 108 CCDS HistoryNCBI Gene:115209Re-query CCDS DB by CCDS ID:608.1Re-query CCDS DB by GeneID:115209See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 608.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371226.8 ENSP00000360270.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371226.8Link to Ensembl Protein Viewer:ENSP00000360270.3Re-query CCDS DB by Nucleotide ID:ENST00000371226Re-query CCDS DB by Protein ID:ENSP00000360270
Original member Current member NCBI NM_145243.5 NP_660286.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145243.5Link to Protein Sequence:NP_660286.1Re-query CCDS DB by Nucleotide ID:NM_145243Re-query CCDS DB by Protein ID:NP_660286Link to BLAST:NP_660286.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660286.1 524 Q96E52-1 524 100% 0 0

Chromosomal Locations for CCDS 608.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58480965 58481174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58506060 58506209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58527261 58527335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58530601 58530729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58533953 58534060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58534158 58534331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58536513 58536741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58538795 58539294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGAGCTTCATCTGTGGATTGCAGTCTGCTGCTAGAAACCATGTTTTCTTCCGATTTAATTCACTGTCTA
ACTGGAGAAAATGTAACACATTAGCATCCACCTCACGGGGCTGTCATCAAGTACAAGTTAACCATATAGT
AAATAAGTATCAGGGACTGGGAGTAAATCAGTGTGACAGGTGGAGTTTTCTGCCTGGAAACTTTCATTTT
TATAGTACTTTTAACAACAAAAGAACAGGAGGCCTCTCAAGTACCAAAAGTAAGGAAATTTGGAGGATTA
CCAGCAAATGTACTGTATGGAATGATGCTTTTTCAAGACAGCTGCTAATAAAAGAAGTTACAGCAGTCCC
TAGTCTGTCAGTATTGCATCCTCTAAGCCCTGCTTCCATAAGAGCTATTAGGAATTTCCATACTTCTCCA
CGGTTTCAAGCTGCTCCGGTTCCTCTCTTGTTGATGATTCTTAAACCAGTACAGAAGTTATTTGCAATCA
TTGTAGGCAGGGGCATAAGGAAATGGTGGCAGGCACTTCCTCCTAACAAGAAGGAAGTAGTTAAAGAAAA
TATAAGGAAGAATAAATGGAAGCTATTCCTTGGTTTGAGTAGTTTTGGATTGCTCTTTGTGGTGTTTTAT
TTTACTCACCTGGAAGTAAGTCCAATCACAGGAAGGAGCAAGCTACTATTATTGGGGAAAGAACAGTTCA
GACTTTTATCGGAACTGGAATATGAAGCATGGATGGAAGAATTTAAAAATGATATGCTAACTGAGAAAGA
TGCCCGATACCTGGCTGTTAAAGAAGTGCTTTGTCATCTAATTGAATGCAATAAAGATGTTCCAGGGATC
TCTCAGATCAATTGGGTTATTCATGTGGTTGATTCCCCAATTATTAATGCCTTCGTGCTTCCAAATGGAC
AAATGTTTGTTTTCACTGGATTTTTAAATAGTGTAACCGATATTCATCAACTTTCTTTCCTTCTGGGCCA
TGAAATAGCACATGCAGTACTTGGGCATGCTGCAGAAAAGGCTGGCATGGTTCATTTGTTGGATTTCCTA
GGTATGATTTTCCTCACAATGATTTGGGCCATTTGTCCTCGAGATAGCTTGGCACTTTTGTGCCAGTGGA
TACAGTCTAAATTGCAGGAGTATATGTTTAATAGACCATACAGCAGAAAATTGGAGGCCGAAGCTGACAA
AATTGGACTACTGCTTGCTGCAAAGGCTTGTGCAGACATAAGAGCCAGTTCAGTGTTTTGGCAGCAAATG
GAGTTCGTTGATAGCCTGCATGGCCAACCCAAGATGCCAGAATGGTTATCTACACACCCTTCTCATGGCA
ATCGAGTTGAGTACTTGGATAGACTTATACCTCAGGCTCTCAAAATTAGAGAGATGTGTAATTGTCCACC
ACTGTCTAATCCAGACCCTCGATTACTATTCAAACTCAGCACGAAGCATTTTCTTGAAGAATCAGAGAAA
GAAGACCTAAATATCACGAAGAAACAGAAAATGGATACTCTTCCTATTCAAAAACAGGAGCAAATACCAT
TAACATACATAGTTGAGAAAAGAACGGGCAGTTGA

Translation (524 aa):
MSFICGLQSAARNHVFFRFNSLSNWRKCNTLASTSRGCHQVQVNHIVNKYQGLGVNQCDRWSFLPGNFHF
YSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLSVLHPLSPASIRAIRNFHTSP
RFQAAPVPLLLMILKPVQKLFAIIVGRGIRKWWQALPPNKKEVVKENIRKNKWKLFLGLSSFGLLFVVFY
FTHLEVSPITGRSKLLLLGKEQFRLLSELEYEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGI
SQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAGMVHLLDFL
GMIFLTMIWAICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIGLLLAAKACADIRASSVFWQQM
EFVDSLHGQPKMPEWLSTHPSHGNRVEYLDRLIPQALKIREMCNCPPLSNPDPRLLFKLSTKHFLEESEK
EDLNITKKQKMDTLPIQKQEQIPLTYIVEKRTGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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