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Report for CCDS6049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6049.1 Public Homo sapiens 8 CDCA2 24 110 108 CCDS HistoryNCBI Gene:157313Re-query CCDS DB by CCDS ID:6049.1Re-query CCDS DB by GeneID:157313See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6049.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330560.8 ENSP00000328228.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330560.8Link to Ensembl Protein Viewer:ENSP00000328228.3Re-query CCDS DB by Nucleotide ID:ENST00000330560Re-query CCDS DB by Protein ID:ENSP00000328228
Original member Current member NCBI NM_152562.4 NP_689775.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152562.4Link to Protein Sequence:NP_689775.2Re-query CCDS DB by Nucleotide ID:NM_152562Re-query CCDS DB by Protein ID:NP_689775Link to BLAST:NP_689775.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689775.2 1023 Q69YH5-1 1023 100% 0 0

Chromosomal Locations for CCDS 6049.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25460240 25460300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25460384 25460554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25462054 25462208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25466175 25466325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25468217 25468413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25469896 25469980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25479913 25480124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25483399 25483486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25483966 25484210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25485759 25485837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25487246 25487334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25488552 25488689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25503373 25503544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25506510 25507738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3072 nt):
ATGGATGCCAATTCAAAAGACAAGCCCCCTGAAACCAAGGAGTCTGCAATGAATAATGCTGGAAATGCCT
CTTTCATTTTGGGAACTGGGAAGATTGTGACTCCTCAGAAGCATGCCGAATTACCTCCTAATCCTTGCAC
ACCAGATACTTTTAAATCACCTTTGAACTTTTCCACAGTAACCGTAGAGCAATTGGGAATTACACCTGAA
AGCTTTGTTAGGAACTCTGCAGGAAAGTCATCATCCTACCTTAAAAAATGTAGACGACGTTCTGCAGTCG
GTGCTCGGGGCTCTCCTGAAACAAACCATCTGATTCGTTTCATTGCTCGGCAGCAAAATATAAAGAATGC
TAGGAAATCTCCTTTGGCACAAGATTCTCCTTCCCAGGGCAGCCCTGCACTGTATCGAAATGTTAACACT
TTAAGAGAACGAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGGAAAACGAGAAAATGACCGGCT
GTCTGGAATTCTCAGAGGCAGGAAAAGAGTCCGAGATGACAGACTTGACCAGAAAGGAAGGTCTCAGCGC
TTGCCAGCAGTCTGGGTTCCCTGCAGTGTTGTCCTCCAAACGTCGGAGAATATCCTATCAGAGAGACTCT
GATGAAAATCTGACGGATGCTGAAGGAAAAGTAATTGGTCTCCAGATATTCAATATTGATACAGACAGAG
CATGTGCAGTTGAAACTTCTGTAGATCTTTCTGAGATATCATCTAAACTTGGTTCAACACAGTCTGGATT
TTTAGTTGAAGAGTCTCTTCCCCTTTCAGAGCTCACAGAGACTTCAAATGCACTAAAGGTTGCTGACTGT
GTAGTGGGCAAAGGATCAAGTGATGCCGTTTCGCCTGACACGTTCACAGCAGAAGTGAGCTCAGACGCAG
TCCCTGATGTCAGGTCACCAGCTACTCCAGCCTGCAGGAGGGACCTTCCCACCCCCAAGACCTTTGTACT
TCGTTCTGTACTGAAGAAACCCTCTGTTAAGATGTGTCTAGAGAGCTTACAGGAACACTGTAACAACCTC
TATGATGATGATGGGACTCATCCGAGCTTAATCTCAAATCTCCCAAACTGTTGCAAAGAGAAAGAAGCAG
AAGATGAAGAAAATTTTGAAGCACCTGCCTTTCTAAATATGAGGAAGAGGAAGAGAGTTACTTTTGGAGA
GGACTTAAGCCCGGAAGTGTTTGATGAATCTTTGCCAGCAAATACTCCATTGCGTAAAGGAGGAACACCT
GTTTGTAAAAAAGACTTCAGTGGTCTCAGTTCCCTGCTGCTTGAGCAGTCACCTGTTCCTGAGCCATTAC
CTCAACCAGATTTTGATGACAAGGGGGAGAATCTTGAAAACATAGAACCACTTCAAGTATCATTTGCCGT
TCTCAGTTCTCCTAATAAATCATCAATCTCTGAGACCCTTTCAGGCACTGATACCTTTAGTTCTTCAAAT
AACCATGAGAAAATATCCTCTCCTAAAGTTGGTAGAATAACAAGGACTTCTAACAGAAGAAATCAATTGG
TCAGTGTTGTAGAAGAGAGTGTTTGCAACTTATTGAATACAGAAGTTCAGCCTTGTAAAGAAAAGAAAAT
TAATAGGAGGAAGTCTCAAGAAACAAAGTGTACAAAGAGAGCACTTCCTAAGAAGAGTCAGGTTTTAAAA
AGTTGCAGAAAGAAGAAAGGAAAGGGAAAGAAAAGTGTTCAGAAATCTTTATATGGGGAAAGAGACATTG
CTTCTAAGAAGCCCCTCCTCAGTCCTATTCCCGAGCTGCCTGAAGTCCCTGAGATGACACCTTCCATTCC
GAGCATCCGAAGACTGGGTTCAGGTTATTTCAGTTCAAATGGCAAACTGGAAGAAGTGAAGACTCCTAAA
AATCCAGTGAAAAGAAAGGATCTTTTGCGTCATGACCCAGATTTGCATATGCATCAAGGCTATGATAAAT
ATGATGTCTCTGAATTCTGCTCTTATATAAAAAGTTCCTCATCGCTTGGCAATGCTACTTCTGATGAAGA
TCCAAATACAAATATAATGAACATTAATGAAAATAAAAATATTCCAAAAGCAAAAAATAAGTCAGAAAGT
GAAAATGAACCAAAAGCTGGAACTGACAGTCCTGTTTCTTGTGCTTCTGTAACTGAAGAACGTGTGGCAT
CAGATAGTCCCAAACCTGCTCTGACCCTGCAGCAGGGTCAAGAATTTTCTGCTGGTGGTCAAAATGCAGA
AAACCTTTGTCAGTTCTTTAAAATTTCACCAGATTTAAACATAAAGTGTGAAAGAAAGGATGACTTCTTA
GGAGCTGCAGAAGGAAAACTGCAATGCAATCGTTTAATGCCTAATTCACAAAAAGACTGTCATTGTTTAG
GAGATGTCTTAATTGAAAATACGAAAGAATCTAAAAGCCAGAGTGAGGATTTGGGAAGAAAACCCATGGA
AAGTAGCAGTGTTGTGAGTTGCAGAGACAGGAAAGATAGAAGACGTTCCATGTGTTATTCTGATGGTCGA
AGTTTACATTTGGAAAAAAATGGAAATCACACACCATCCTCCAGTGTGGGCAGCTCTGTAGAAATTAGTT
TAGAAAATTCTGAACTGTTTAAAGATTTGTCTGATGCCATTGAGCAAACCTTTCAGAGGAGAAATAGTGA
AACCAAAGTGCGACGTAGCACGAGGCTACAGAAGGATTTAGAAAACGAAGGTCTTGTATGGATTTCACTT
CCACTTCCTTCCACTTCCCAAAAAGCCAAAAGAAGAACAATATGTACATTTGACAGCAGTGGATTTGAAA
GTATGTCTCCCATAAAAGAAACTGTGTCCTCCAGACAAAAACCGCAGATGGCACCTCCCGTCTCAGATCC
AGAAAACAGCCAGGGCCCTGCTGCTGGTTCTTCCGATGAACCTGGTAAGAGGAGGAAGAGCTTTTGTATA
TCTACACTTGCAAATACTAAAGCCACTTCCCAGTTCAAAGGCTACCGGAGAAGATCCTCTCTTAATGGGA
AGGGAGAGAGCTCTCTGACTGCCTTGGAAAGGATTGAACATAATGGAGAAAGAAAGCAGTAA

Translation (1023 aa):
MDANSKDKPPETKESAMNNAGNASFILGTGKIVTPQKHAELPPNPCTPDTFKSPLNFSTVTVEQLGITPE
SFVRNSAGKSSSYLKKCRRRSAVGARGSPETNHLIRFIARQQNIKNARKSPLAQDSPSQGSPALYRNVNT
LRERISAFQSAFHSIKENEKMTGCLEFSEAGKESEMTDLTRKEGLSACQQSGFPAVLSSKRRRISYQRDS
DENLTDAEGKVIGLQIFNIDTDRACAVETSVDLSEISSKLGSTQSGFLVEESLPLSELTETSNALKVADC
VVGKGSSDAVSPDTFTAEVSSDAVPDVRSPATPACRRDLPTPKTFVLRSVLKKPSVKMCLESLQEHCNNL
YDDDGTHPSLISNLPNCCKEKEAEDEENFEAPAFLNMRKRKRVTFGEDLSPEVFDESLPANTPLRKGGTP
VCKKDFSGLSSLLLEQSPVPEPLPQPDFDDKGENLENIEPLQVSFAVLSSPNKSSISETLSGTDTFSSSN
NHEKISSPKVGRITRTSNRRNQLVSVVEESVCNLLNTEVQPCKEKKINRRKSQETKCTKRALPKKSQVLK
SCRKKKGKGKKSVQKSLYGERDIASKKPLLSPIPELPEVPEMTPSIPSIRRLGSGYFSSNGKLEEVKTPK
NPVKRKDLLRHDPDLHMHQGYDKYDVSEFCSYIKSSSSLGNATSDEDPNTNIMNINENKNIPKAKNKSES
ENEPKAGTDSPVSCASVTEERVASDSPKPALTLQQGQEFSAGGQNAENLCQFFKISPDLNIKCERKDDFL
GAAEGKLQCNRLMPNSQKDCHCLGDVLIENTKESKSQSEDLGRKPMESSSVVSCRDRKDRRRSMCYSDGR
SLHLEKNGNHTPSSSVGSSVEISLENSELFKDLSDAIEQTFQRRNSETKVRRSTRLQKDLENEGLVWISL
PLPSTSQKAKRRTICTFDSSGFESMSPIKETVSSRQKPQMAPPVSDPENSQGPAAGSSDEPGKRRKSFCI
STLANTKATSQFKGYRRRSSLNGKGESSLTALERIEHNGERKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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