NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS60266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60266.1 Public Homo sapiens 1 SELENBP1 24 110 108 CCDS HistoryNCBI Gene:8991Re-query CCDS DB by CCDS ID:60266.1Re-query CCDS DB by GeneID:8991See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60266.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000426705.6 ENSP00000397261.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426705.6Link to Ensembl Protein Viewer:ENSP00000397261.2Re-query CCDS DB by Nucleotide ID:ENST00000426705Re-query CCDS DB by Protein ID:ENSP00000397261
Original member Current member NCBI NM_001258289.2 NP_001245218.1 Accepted alive Link to Nucleotide Sequence:NM_001258289.2Link to Protein Sequence:NP_001245218.1Re-query CCDS DB by Nucleotide ID:NM_001258289Re-query CCDS DB by Protein ID:NP_001245218Link to BLAST:NP_001245218.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245218.1 514 Q13228-4 514 100% 0 0

Chromosomal Locations for CCDS 60266.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151364543 151364705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151364926 151365044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151365189 151365281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151365563 151365684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151365768 151365846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151366275 151366453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151366722 151366904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151368199 151368319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151369004 151369189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151369442 151369554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151369713 151369899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGAGGCTGGAGTGGGGACCTAGGCCAGCCGCACTGCCGTGGCCCGCTGGGATGTGTGCTGCAGAACGTG
CGGAGGGAGCCTTCACCCTCCAGAGCGTGGCCCAGCCAATGCGCCCCATTGCTTCCACAGCTACGAAATG
TGGGAATTGTGGACCCGGCTACTCCACCCCTCTGGAGGCCATGAAAGGACCCAGGGAAGAGATCGTCTAC
CTGCCCTGCATTTACCGAAACACAGGCACTGAGGCCCCAGATTATCTGGCCACTGTGGATGTTGACCCCA
AGTCTCCCCAGTATTGCCAGGTCATCCACCGGCTGCCCATGCCCAACCTGAAGGACGAGCTGCATCACTC
AGGATGGAACACCTGCAGCAGCTGCTTCGGTGATAGCACCAAGTCGCGCACCAAGCTGGTGCTGCCCAGT
CTCATCTCCTCTCGCATCTATGTGGTGGACGTGGGCTCTGAGCCCCGGGCCCCAAAGCTGCACAAGGTCA
TTGAGCCCAAGGACATCCATGCCAAGTGCGAACTGGCCTTTCTCCACACCAGCCACTGCCTGGCCAGCGG
GGAAGTGATGATCAGCTCCCTGGGAGACGTCAAGGGCAATGGCAAAGGGGGTTTTGTGCTGCTGGATGGG
GAGACGTTCGAGGTGAAGGGGACATGGGAGAGACCTGGGGGTGCTGCACCGTTGGGCTATGACTTCTGGT
ACCAGCCTCGACACAATGTCATGATCAGCACTGAGTGGGCAGCTCCCAATGTCTTACGAGATGGCTTCAA
CCCCGCTGATGTGGAGGCTGGACTGTACGGGAGCCACTTATATGTATGGGACTGGCAGCGCCATGAGATT
GTGCAGACCCTGTCTCTAAAAGATGGGCTTATTCCCTTGGAGATCCGCTTCCTGCACAACCCAGACGCTG
CCCAAGGCTTTGTGGGCTGCGCACTCAGCTCCACCATCCAGCGCTTCTACAAGAACGAGGGAGGTACATG
GTCAGTGGAGAAGGTGATCCAGGTGCCCCCCAAGAAAGTGAAGGGCTGGCTGCTGCCCGAAATGCCAGGC
CTGATCACCGACATCCTGCTCTCCCTGGACGACCGCTTCCTCTACTTCAGCAACTGGCTGCATGGGGACC
TGAGGCAGTATGACATCTCTGACCCACAGAGACCCCGCCTCACAGGACAGCTCTTCCTCGGAGGCAGCAT
TGTTAAGGGAGGCCCTGTGCAAGTGCTGGAGGACGAGGAACTAAAGTCCCAGCCAGAGCCCCTAGTGGTC
AAGGGAAAACGGGTGGCTGGAGGCCCTCAGATGATCCAGCTCAGCCTGGATGGGAAGCGCCTCTACATCA
CCACGTCGCTGTACAGTGCCTGGGACAAGCAGTTTTACCCTGATCTCATCAGGGAAGGCTCTGTGATGCT
GCAGGTTGATGTAGACACAGTAAAAGGAGGGCTGAAGTTGAACCCCAACTTCCTGGTGGACTTCGGGAAG
GAGCCCCTTGGCCCAGCCCTTGCCCATGAGCTCCGCTACCCTGGGGGCGATTGTAGCTCTGACATCTGGA
TTTGA

Translation (514 aa):
MRLEWGPRPAALPWPAGMCAAERAEGAFTLQSVAQPMRPIASTATKCGNCGPGYSTPLEAMKGPREEIVY
LPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPS
LISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDG
ETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEI
VQTLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPG
LITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVV
KGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGK
EPLGPALAHELRYPGGDCSSDIWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH