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Report for CCDS6000.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6000.2 Public Homo sapiens 8 CNOT7 24 110 108 CCDS HistoryNCBI Gene:29883Re-query CCDS DB by CCDS ID:6000.2Re-query CCDS DB by GeneID:29883See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6000.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361272.9 ENSP00000355279.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361272.9Link to Ensembl Protein Viewer:ENSP00000355279.4Re-query CCDS DB by Nucleotide ID:ENST00000361272Re-query CCDS DB by Protein ID:ENSP00000355279
Original member Current member NCBI NM_001322090.2 NP_001309019.1 Accepted alive Link to Nucleotide Sequence:NM_001322090.2Link to Protein Sequence:NP_001309019.1Re-query CCDS DB by Nucleotide ID:NM_001322090Re-query CCDS DB by Protein ID:NP_001309019Link to BLAST:NP_001309019.1
Original member Current member NCBI NM_001322091.2 NP_001309020.1 Accepted alive Link to Nucleotide Sequence:NM_001322091.2Link to Protein Sequence:NP_001309020.1Re-query CCDS DB by Nucleotide ID:NM_001322091Re-query CCDS DB by Protein ID:NP_001309020Link to BLAST:NP_001309020.1
Original member Current member NCBI NM_001322092.2 NP_001309021.1 Accepted alive Link to Nucleotide Sequence:NM_001322092.2Link to Protein Sequence:NP_001309021.1Re-query CCDS DB by Nucleotide ID:NM_001322092Re-query CCDS DB by Protein ID:NP_001309021Link to BLAST:NP_001309021.1
Original member Current member NCBI NM_013354.7 NP_037486.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013354.7Link to Protein Sequence:NP_037486.2Re-query CCDS DB by Nucleotide ID:NM_013354Re-query CCDS DB by Protein ID:NP_037486Link to BLAST:NP_037486.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309019.1 285 Q9UIV1-1 285 100% 0 0
NP_001309020.1 285 Q9UIV1-1 285 100% 0 0
NP_001309021.1 285 Q9UIV1-1 285 100% 0 0
NP_037486.2 285 Q9UIV1-1 285 100% 0 0

Chromosomal Locations for CCDS 6000.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 17230720 17230848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17232427 17232537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17234716 17234860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17237212 17237373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17242992 17243185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17245036 17245152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGCCAGCGGCAACTGTAGATCATAGCCAAAGAATTTGTGAAGTTTGGGCTTGCAACTTGGATGAAGAGA
TGAAGAAAATTCGTCAAGTTATCCGAAAATATAATTACGTTGCTATGGACACCGAGTTTCCAGGTGTGGT
TGCAAGACCCATTGGAGAATTCAGGAGCAATGCTGACTATCAATACCAACTATTGCGGTGTAATGTAGAC
TTGTTAAAGATAATTCAGCTAGGACTGACATTTATGAATGAGCAAGGAGAATACCCTCCAGGAACTTCAA
CTTGGCAGTTTAATTTTAAATTTAATTTGACGGAGGACATGTATGCCCAGGACTCTATAGAGCTACTAAC
AACATCTGGTATCCAGTTTAAAAAACATGAGGAGGAAGGAATTGAAACCCAGTACTTTGCAGAACTTCTT
ATGACTTCTGGAGTGGTCCTCTGTGAAGGGGTCAAATGGTTGTCATTTCATAGCGGTTACGACTTTGGCT
ACTTAATCAAAATCCTAACCAACTCTAACTTGCCTGAAGAAGAACTTGACTTCTTTGAGATCCTTCGATT
GTTTTTTCCTGTCATTTATGATGTGAAGTACCTCATGAAGAGCTGCAAAAATCTCAAAGGTGGATTACAG
GAGGTGGCAGAACAGTTAGAGCTGGAACGGATAGGACCACAACATCAGGCAGGATCTGATTCATTGCTCA
CAGGAATGGCCTTTTTCAAAATGAGAGAAATGTTCTTTGAAGATCATATTGATGATGCCAAATATTGTGG
TCATTTGTATGGCCTTGGTTCTGGTTCATCCTATGTACAGAATGGCACAGGGAATGCATATGAAGAGGAA
GCCAACAAGCAGTCATGA

Translation (285 aa):
MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD
LLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELL
MTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQ
EVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEE
ANKQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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