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Report for CCDS5967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5967.1 Public Homo sapiens 8 SPAG11B 24 110 108 CCDS HistoryNCBI Gene:10407Re-query CCDS DB by CCDS ID:5967.1Re-query CCDS DB by GeneID:10407See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5967.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317900.7 ENSP00000322591.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317900.7Link to Ensembl Protein Viewer:ENSP00000322591.5Re-query CCDS DB by Nucleotide ID:ENST00000317900Re-query CCDS DB by Protein ID:ENSP00000322591
Original member Current member NCBI NM_058203.4 NP_478110.1 Accepted alive Link to Nucleotide Sequence:NM_058203.4Link to Protein Sequence:NP_478110.1Re-query CCDS DB by Nucleotide ID:NM_058203Re-query CCDS DB by Protein ID:NP_478110Link to BLAST:NP_478110.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_478110.1 113 Q08648-3 113 100% 0 0

Chromosomal Locations for CCDS 5967.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 7461407 7461534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 7462707 7462859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 7463443 7463503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGAGGCAACGATTGCTCCCGTCCGTCACCAGCCTTCTCCTTGTGGCCCTGCTGTTTCCAGGATCGTCTC
AAGCCAGACATGTGAACCACTCAGCCACTGAGGCTCTCGGAGAACTCAGGGAAAGAGCCCCTGGGCAAGG
CACAAACGGGTTTCAGCTGCTACGCCACGCAGTGAAACGGGACCTCTTACCACCGCGCACCCCACCTTAC
CAAGAACCTGCATCAGATTTAAAAGTTGTTGACTGCAGGAGAAGTGAAGGCTTCTGCCAAGAATACTGTA
ATTATATGGAAACACAAGTAGGCTACTGCTCTAAAAAGAAAGACGCCTGCTGTTTACATTAA

Translation (113 aa):
MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPY
QEPASDLKVVDCRRSEGFCQEYCNYMETQVGYCSKKKDACCLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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