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Report for CCDS5966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5966.1 Public Homo sapiens 8 SPAG11B 24 110 108 CCDS HistoryNCBI Gene:10407Re-query CCDS DB by CCDS ID:5966.1Re-query CCDS DB by GeneID:10407See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5966.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297498.6 ENSP00000297498.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297498.6Link to Ensembl Protein Viewer:ENSP00000297498.2Re-query CCDS DB by Nucleotide ID:ENST00000297498Re-query CCDS DB by Protein ID:ENSP00000297498
Original member Current member NCBI NM_016512.5 NP_057596.1 Accepted alive Link to Nucleotide Sequence:NM_016512.5Link to Protein Sequence:NP_057596.1Re-query CCDS DB by Nucleotide ID:NM_016512Re-query CCDS DB by Protein ID:NP_057596Link to BLAST:NP_057596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057596.1 103 Q08648-1 103 100% 0 0

Chromosomal Locations for CCDS 5966.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 7450879 7450900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 7451124 7451199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 7462707 7462859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 7463443 7463503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGAGGCAACGATTGCTCCCGTCCGTCACCAGCCTTCTCCTTGTGGCCCTGCTGTTTCCAGGATCGTCTC
AAGCCAGACATGTGAACCACTCAGCCACTGAGGCTCTCGGAGAACTCAGGGAAAGAGCCCCTGGGCAAGG
CACAAACGGGTTTCAGCTGCTACGCCACGCAGTGAAACGGGACCTCTTACCACCGCGCACCCCACCTTAC
CAAGTGCACATCTCTCACCGGGAGGCTCGAGGACCCTCATTTAGGATCTGTGTGGACTTTTTAGGGCCTA
GATGGGCCAGGGGATGTTCCACCGGGAATTAG

Translation (103 aa):
MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPY
QVHISHREARGPSFRICVDFLGPRWARGCSTGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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