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Report for CCDS59544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59544.1 Public Mus musculus 10 Sowahc 23 108 98 CCDS HistoryNCBI Gene:268301Re-query CCDS DB by CCDS ID:59544.1Re-query CCDS DB by GeneID:268301See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182161.1 ENSMUSP00000138351.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182161.1Link to Ensembl Protein Viewer:ENSMUSP00000138351.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182161Re-query CCDS DB by Protein ID:ENSMUSP00000138351
Original member Current member NCBI NM_172939.3 NP_766527.3 Accepted alive Link to Nucleotide Sequence:NM_172939.3Link to Protein Sequence:NP_766527.3Re-query CCDS DB by Nucleotide ID:NM_172939Re-query CCDS DB by Protein ID:NP_766527Link to BLAST:NP_766527.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766527.3 512 Q8C0J6 512 100% 0 0

Chromosomal Locations for CCDS 59544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59222044 59223582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGAGGGGTCACTGGAGCTGAGCTCGGAGGCGATCCTGCGCTTCCTCGCCGAGCGTGGGGGCCGGGCGG
GACACTCGGAATTGGTGCAACACTTCAGGGACGTCCTGGGTGGCCAGCGCGAACAGCGCACCCGCGCCCG
CGAGCGCTTCAAGGAACTGGTCAATGCCGTGGCCACCGTGCGCACCGATCCCGCGGATGGTACCAAGTAT
GTGCATCTCAAGAAAAGGTTCTGTACGGGGGATTCCCCCCCGCTTGAGGCCAAGCTCCCCCGAGAGCCCC
CGCGTATCGAGGTGACTGAGGAGCCTCAAGTCCCGGACCTTGCAGCGGAGCCTTGCGAGGGCAGCCAGCT
CCAGGAGGCAAATCCACAGTTGTCTCTCGGACTGGGTGGCGAAGTGAGCGACCAAGAGCCTCCAGCCCCT
GCTCAAGGTGGGGCCCAAGGTAAGGACTCGCCACCACAGGAGGTCGAGGCCGTGTCCTGGGCGTCGGGTC
CCGGGTCCAGCGAGAACCTTAAACTCCCTCCACAGGGGGAGGCTGAAGGGGGCAGTTCCCCTAGTGGGCC
AAACACACCCAGGTCGGCCCGTCAGAACTTTCGGGACCTGGTGTTGGGCAGCTCCCCGCAACTAAAGAGG
AGCGTGGGTCCTGGGGACGGTAACGCTGGAGGTCGCAGCAGAGGAGGGGGCGACTCCGATACCGCATCGT
TAGCTTCTTCGTCCGCAGAAGAGGAGAGCAGCGTCGGGGCCTCGGTTACCCTGGATCCCCTGGATCACGC
CTGGATGCTCTCAGCTTCCGAGGGCAAGTGGGACAGCCTAGAAGGGCTGCTCACTTGTGAGCCCGGCCTG
CTCTCGAAGCGAGACTTCATCACCGGCTTCACTTGTCTCCACTGGGCCGCCAAGCACGGCAGGCAAGAGC
TCCTGGCCATGTTGGTCAACTTTGCCACCAAACACCAGCTGCCAGTGAACATCAATGCCAAGTCGAGCGG
AGGCTACACTGCCCTACATTTGGCAGCGATGCATGGGCATGTAGAGGTGGTGAAGTTACTAGTGGGGGCC
TACGACGCAGATGTAGACATCAGGGACTACAGCGGGAGAAAGGCCTCTCAGTATCTGAGCGAGAGCATCG
CAGAGGAGATAAAGAACCTGGTGGGAGCCCTGGATGAAGATGATGGAGACAGCCCTGCCGCCCGCGGGGG
TGGGCGCTGGAGACTTTCAAAGGTGCTCCCCTCACACATCACTCACAAACTCTCCCCGGTCGTGGAAGAC
GGAGCTGAACTTCACCACCACGTCCCCGAGGGATGGACTGGAGGAAGCAAAGCAAAAGATTCAGGTCGCA
AAGCCTCGGGCAGCTCAAGTGGACGGATGAAGCCACGACTCAACAAAATCCGATTCCGAACCCAGATCAT
TCACACCACTCCCTCCTTCAGGGATGCTAAACCGACACTGGAGGAAGGGGAGGAGGAGGAGGAGGAGGAG
GAGGAAAGGTCTCTTAGAGGCTACTCATCTTCCTTTAAACTGAGACCGAAGTCCAATGTATTTGGGTAA

Translation (512 aa):
MEGSLELSSEAILRFLAERGGRAGHSELVQHFRDVLGGQREQRTRARERFKELVNAVATVRTDPADGTKY
VHLKKRFCTGDSPPLEAKLPREPPRIEVTEEPQVPDLAAEPCEGSQLQEANPQLSLGLGGEVSDQEPPAP
AQGGAQGKDSPPQEVEAVSWASGPGSSENLKLPPQGEAEGGSSPSGPNTPRSARQNFRDLVLGSSPQLKR
SVGPGDGNAGGRSRGGGDSDTASLASSSAEEESSVGASVTLDPLDHAWMLSASEGKWDSLEGLLTCEPGL
LSKRDFITGFTCLHWAAKHGRQELLAMLVNFATKHQLPVNINAKSSGGYTALHLAAMHGHVEVVKLLVGA
YDADVDIRDYSGRKASQYLSESIAEEIKNLVGALDEDDGDSPAARGGGRWRLSKVLPSHITHKLSPVVED
GAELHHHVPEGWTGGSKAKDSGRKASGSSSGRMKPRLNKIRFRTQIIHTTPSFRDAKPTLEEGEEEEEEE
EERSLRGYSSSFKLRPKSNVFG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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