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Report for CCDS59441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59441.1 Public Homo sapiens 2 IQCA1 24 110 108 CCDS HistoryNCBI Gene:79781Re-query CCDS DB by CCDS ID:59441.1Re-query CCDS DB by GeneID:79781See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 59441.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309507.9 ENSP00000311951.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309507.9Link to Ensembl Protein Viewer:ENSP00000311951.6Re-query CCDS DB by Nucleotide ID:ENST00000309507Re-query CCDS DB by Protein ID:ENSP00000311951
Original member Current member NCBI NM_001270584.2 NP_001257513.1 Accepted alive Link to Nucleotide Sequence:NM_001270584.2Link to Protein Sequence:NP_001257513.1Re-query CCDS DB by Nucleotide ID:NM_001270584Re-query CCDS DB by Protein ID:NP_001257513Link to BLAST:NP_001257513.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257513.1 781 Q86XH1-5 781 100% 0 0

Chromosomal Locations for CCDS 59441.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 236324688 236324783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236331359 236331597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236338205 236338382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236344557 236344643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236363780 236363979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236368194 236368301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236377103 236377185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236380569 236380633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236391976 236392071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236392244 236392350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236399413 236399488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236441040 236441124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236465505 236465710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236486829 236486900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236488000 236488191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236493768 236493887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236497163 236497487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236507257 236507267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2346 nt):
ATGTCGAACGCAATGTATAATAAGATGTGGCATCAGACCCAAGAAGCCCTCGGTGCTTTACTCGATAAAG
AGCCTCAGAAGATGATTGAACCACAAAGAAATCAGGTTTTCATCTTTCAAACATTAGCCACCTTCTACGT
AAAGTATGTGCAGATCTTTAGAAACCTAGAGAATGTCTACGACCAGTTCGTCCACCCCCAGAAACGAATA
CTGATCAGGAAAGTCCTGGACGGGGTGATGGGCCGCATCCTGGAGCTGAAGAACGAGATGGTGGAGCTGG
AACTCACGGAGTTCCATTATTTCGATGATATCCTGCAGGATCTCAAGCTGGCCCCCCAACAATTAGATAT
TCCCATACCCAAGTATTTTTTGAAGGAGAAGTTGGAAGTAATAAAAGGAAGAGAGAAAATTCTTGCTCAA
ATATTAGCGGACAGCGGAATAGATACATCTGACATGAAATACCCTGTAAAGAGTATCCCTTTCGATGAGG
CTGTTAAATTAATCCAGATTGCTGAGAGGGCACGGCAAGGTCGCCTAAGGGCTTTATTCATGAAGCAAAT
CTATCTGCAAGAATATAGAGCAAAGCAATCCAAGATGCTTGGCAAGAAAGTGACAGATACCTGGGCTGCT
GCACTCCGCATTCAGAAGGTTTGGCGACGTTTCCATCAACGTAAGGAAACTGAAAAACTGAGAGAAGAGG
AGATGATCTTCCTGGGTATGAATCCACCTCCTCTCTTTAATGAAGTCAGTGCTACAGTAATCCAGGCTGA
AAAGGTGGACCGCCTGCGGAATGAGGTGCAGATAAAGCATGAAGAGGACTACAGGGAAGCCCTGGTTACC
ATCAAGAATGACCTAAAGTTGATAGAAGGCGTGGATATCAAGGAGAACCTTCAAGACCAGATCCGGCATT
GGTTCATCGAATGCAGAAATTTAACCGGGACATTTCCTGACTACCCTGACGTTGAAGAAGGAGGGTCAGC
TATTATTTTTTCTGACAAGACCATACAACAGGAAGAAGACGAAAAATGGAAAATGTCACCAAGTCTTTTT
CTTCCTGCAATGAAGGAAGGATGTAACGCATACAAAGAAATCTGGATGAAAAAAGATGAGTCTTGGAATT
TCTCTCAGGACTATGATCCAGAACTGATCAAAGAGGAGAAACGAAAAGAATTACAGTCAGAGATCAGGAT
ACAGGTTGATGAGTTGATGAGACAGGAACTTAAAAACTTAAAGCTAGCTGTGGACAGAGAAAGGGAGCGC
CCAGTGAAAGCAGGAAAGAAAAAGGACAAGAAAGGAAAGAAAGGCAAAAAGAAAGAGAAGAAGGCAAAGA
AGGATAAAGATCTGACAGCTGACAGGACCATCGAGTCTCTGTATAAGGAACTGGTGGAAGAAGGATTACT
GATCCAGGCTCTGAAAGTCAACCTCTCTGATTACATTGGTGAGTACAGCTACCTGGGGACTACTCTTCGC
CAGGTGTCCATAGAACCCATGCCCTCCCTCCTGGATGTCAGACAGCTCATCACATTGTACGGAATCTGGC
CATTAGGTTCTGCAGCAGTGCATGAGAAAGCTCCTTTGGTGAAATCGCTACTGTTAGCCGGGCCGTCTGG
GGTAGGGAAGAAAATGCTGGTCCATGCCATCTGCACCGAAACGGGAGCCAACCTCTTCAACTTGTCCTCC
TCTAACATTGCTGGGAAATACCCTGGCAAAAATGGCCTCCAAATGATGCTGCATGCAGTCTTCAAGGTGG
CTCGACAGCTCCAGCCCTCCGTGGTGTGGATTGAAGACACAGAAAAAACCTTCTACAAAAAAGTTCCCAA
CGCAGAAAAGATGAATGAACCTAAACGCCTGAAAAAACACCTTCCCCAAATCCTGAAACTCCTGAAACCA
GATGACCGGATTCTGATTGTGGGGACCACACGGCGTCCCTTCGATGCTGAACTCCAATCTTTCTGCAAAG
TTTACCAGAAAATTATTTTGGTGCCCAGACCAGACTATGCTTCCAGATACGTTCTGTGGAAGCAAATCAT
TGAACGCAATGGAGGAGTCCTCACCAGTGCCTTGAATGTCAGCTGCCTGGCGAAGGTCACTGACGGCTTC
ACCCAAGGACATATAGTCGAAGTGGTTAAAGGCGTGCTCACAGATCAGAGAATCCGGCGGCAAATTCATA
AACCTCTCACTGCAGTTGAGTTTATTACGGCGATAACCAGCATGAATCCAGTGTACAAAGAGGAAGAAGA
GAGCTTTAAGAACTGGTATGCCAAAACTCCTCTGGGTAAAAAACGTGCCTTGGCGATAACAGGAGGCAGC
ACAGAAAAGGCAAAGGACAAAGGGAAAAGGAAATAA

Translation (781 aa):
MSNAMYNKMWHQTQEALGALLDKEPQKMIEPQRNQVFIFQTLATFYVKYVQIFRNLENVYDQFVHPQKRI
LIRKVLDGVMGRILELKNEMVELELTEFHYFDDILQDLKLAPQQLDIPIPKYFLKEKLEVIKGREKILAQ
ILADSGIDTSDMKYPVKSIPFDEAVKLIQIAERARQGRLRALFMKQIYLQEYRAKQSKMLGKKVTDTWAA
ALRIQKVWRRFHQRKETEKLREEEMIFLGMNPPPLFNEVSATVIQAEKVDRLRNEVQIKHEEDYREALVT
IKNDLKLIEGVDIKENLQDQIRHWFIECRNLTGTFPDYPDVEEGGSAIIFSDKTIQQEEDEKWKMSPSLF
LPAMKEGCNAYKEIWMKKDESWNFSQDYDPELIKEEKRKELQSEIRIQVDELMRQELKNLKLAVDRERER
PVKAGKKKDKKGKKGKKKEKKAKKDKDLTADRTIESLYKELVEEGLLIQALKVNLSDYIGEYSYLGTTLR
QVSIEPMPSLLDVRQLITLYGIWPLGSAAVHEKAPLVKSLLLAGPSGVGKKMLVHAICTETGANLFNLSS
SNIAGKYPGKNGLQMMLHAVFKVARQLQPSVVWIEDTEKTFYKKVPNAEKMNEPKRLKKHLPQILKLLKP
DDRILIVGTTRRPFDAELQSFCKVYQKIILVPRPDYASRYVLWKQIIERNGGVLTSALNVSCLAKVTDGF
TQGHIVEVVKGVLTDQRIRRQIHKPLTAVEFITAITSMNPVYKEEEESFKNWYAKTPLGKKRALAITGGS
TEKAKDKGKRK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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