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Report for CCDS59284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59284.1 Public Homo sapiens 17 SYNRG 24 110 108 CCDS HistoryNCBI Gene:11276Re-query CCDS DB by CCDS ID:59284.1Re-query CCDS DB by GeneID:11276See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59284.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619541.4 ENSP00000477885.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619541.4Link to Ensembl Protein Viewer:ENSP00000477885.1Re-query CCDS DB by Nucleotide ID:ENST00000619541Re-query CCDS DB by Protein ID:ENSP00000477885
Original member Current member NCBI NM_001163545.3 NP_001157017.1 Accepted alive Link to Nucleotide Sequence:NM_001163545.3Link to Protein Sequence:NP_001157017.1Re-query CCDS DB by Nucleotide ID:NM_001163545Re-query CCDS DB by Protein ID:NP_001157017Link to BLAST:NP_001157017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157017.1 1235 Q9UMZ2-8 1235 100% 0 0

Chromosomal Locations for CCDS 59284.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37518940 37519071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37520179 37520214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37520538 37520648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37535979 37536127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37538324 37538420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37539192 37539245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37540380 37540543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37541972 37542565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37553115 37554059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37561195 37561257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37561471 37561589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37568791 37568924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37570637 37570885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37571791 37571987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37576341 37576418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37584648 37584759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37585325 37585430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37586419 37586549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37596223 37596341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37600363 37600403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37609279 37609355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3708 nt):
ATGGCGCTGCGGCCAGGAGCTGGTTCTGGTGGCGGCGGGGCCGCGGGAGCTGGCGCGGGGTCCGCCGGGG
GAGGCGGCTTCATGTTTCCTGTTGCAGGTGGGATAAGACCCCCTCAAGGCCTGATGCCGATGCAGCAACA
AGGATTTCCTATGGTCTCTGTCATGCAGCCTAATATGCAAGGCATTATGGGAATGAATTACAGCTCTCAG
ATGTCCCAAGGACCTATTGCTATGCAGGCAGGAATACCAATGGGACCAATGCCAGCAGCGGGAATGCCTT
ACCTAGGACAAGCACCCTTCCTGGGCATGCGTCCTCCAGGCCCACAGTACACTCCAGACATGCAGAAGCA
GTTTGCCGAAGAGCAGCAGAAACGATTTGAACAGCAGCAAAAACTCTTAGAAGAAGAAAGAAAAAGACGC
CAGTTTGAAGAGCAGAAGCAAAAGCTCAGACTTTTGAGCAGTGTGAAACCCAAGACAGGAGAGAAGAGTA
GAGATGATGCTTTGGAAGCCATAAAAGGAAATTTAGATGGGTTTTCCAGAGATGCAAAAATGCACCCTAC
TCCAGCATCGCACCCCAAGAAACCAGGTGTGGGAGTATTTCCCTCACAGGATCCTGCTCAGCCCAGAATG
CCTCCTTGGATTTACAATGAGAGTTTGGTTCCAGATGCCTATAAGAAAATCTTAGAAACCACAATGACTC
CAACTGGAATAGATACTGCCAAACTGTATCCCATTCTGATGTCATCTGGGCTTCCCAGGGAAACTCTTGG
ACAGATATGGGCCTTAGCTAATCGAACTACACCTGGCAAACTTACAAAAGAAGAACTTTATACCGTTCTA
GCCATGATAGCGGTAACACAGAGGGGCGTTCCTGCAATGAGTCCTGATGCTTTAAACCAGTTCCCAGCAG
CTCCTATTCCAACTTTAAGTGGCTTTTCTATGACTCTGCCTACACCGGTGAGTCAGCCAACTGTGATACC
TTCAGGTCCTGCGGGCTCCATGCCCCTCAGCCTTGGACAGCCAGTCATGGGCATTAACCTTGTTGGACCA
GTGGGTGGAGCTGCAGCCCAGGCTTCTAGTGGTTTCATACCAACCTACCCTGCAAATCAGGTAGTAAAGC
CAGAAGAAGATGACTTCCAGGATTTTCAAGATGCTTCTAAGTCAGGATCCCTTGATGACTCATTCAGTGA
TTTCCAAGAGTTGCCTGCTTCTTCAAAAACAAGTAACTCCCAGCATGGAAACAGTGCCCCTTCTTTGTTG
ATGCCACTTCCTGGAACTAAAGCATTGCCTTCAATGGACAAATATGCTGTGTTTAAAGGAATTGCAGCTG
ACAAGTCCTCTGAAAATACTGTTCCACCTGGAGATCCTGGTGATAAATATAGTGCTTTCAGAGAACTTGA
ACAGACAGCAGAGAATAAACCTTTAGGAGAAAGCTTTGCAGAATTCAGATCTGCAGGAACTGATGATGGT
TTCACCGATTTTAAAACAGCCGATAGTGTATCACCACTAGAGCCACCAACAAAAGACAAAACTTTTCCAC
CATCCTTCCCCTCAGGAACTATACAACAGAAACAACAAACACAAGTGAAAAACCCTCTGAACTTAGCAGA
CCTAGATATGTTTTCCTCAGTTAATTGCAGCAGCGAGAAACCATTGTCTTTTTCAGCTGTGTTTAGCACA
TCAAAATCAGTTTCTACACCACAGTCAACAGGTTCTGCTGCTACTATGACAGCATTGGCAGCAACAAAAA
CTTCTAGTTTGGCTGATGATTTTGGAGAATTCAGCCTTTTTGGGGAATATTCTGGTCTAGCACCTGTTGG
GGAGCAGGATGACTTTGCAGATTTTATGGCTTTCAGTAATAGCTCTATTTCATCTGAGCAAAAGCCGGAT
GACAAATATGATGCCCTTAAAGAGGAAGCCAGTCCTGTTCCTCTAACCAGCAACGTGGGCAGCACAGTGA
AGGGTGGACAAAACTCGACTGCTGCGTCTACCAAGTACGATGTCTTCAGACAACTTTCTCTGGAAGGGTC
TGGACTAGGTGTTGAAGACCTGAAAGATAACACTCCTTCAGGAAAAAGTGATGATGATTTTGCTGACTTC
CACTCCAGTAAATTTTCTTCCATAAACTCGGACAAATCCCTGGGAGAGAAAGCAGTGGCTTTCAGACACA
CCAAAGAAGACTCTGCATCAGTGAAGTCCTTAGATCTCCCTTCCATTGGTGGCAGCAGTGTTGGCAAGGA
GGACTCTGAAGATGCACTCTCTGTTCAGTTTGACATGAAATTGGCTGATGTGGGAGGAGATCTTAAGCAT
GTCATGTCTGATAGCTCTTTGGATTTACCAACAGTTAGTGGCCAGCATCCTCCTGCTGCAGATATAGAGG
ACTTAAAATATGCTGCTTTTGGAAGCTACAGTAGCAATTTTGCAGTGAGCACACTTACAAGCTATGACTG
GTCAGACAGGGATGATGCAACTCAGGGCAGAAAACTCTCTCCATTTGTCCTCTCAGCAGGAAGTGGATCC
CCCTCAGCCACCTCAATTCTTCAAAAGAAAGAGACTTCATTTGGCAGTTCTGAAAACATCACCATGACAT
CTCTCTCCAAAGTAACGACCTTTGTAAGTGAAGATGCTCTTCCAGAGACCACCTTCCCAGCTCTTGCCAG
TTTTAAAGACACGATTCCTCAGACCAGTGAGCAAAAGGAATATGAAAACAGAGACTATAAAGATTTCACA
AAACAGGACCTGCCTACGGCTGAACGGAGCCAGGAGGCCACGTGTCCCAGCCCAGCGTCCAGTGGTGCCT
CTCAAGAAACCCCGAACGAATGTTCGGATGACTTTGGAGAGTTTCAAAGTGAAAAGCCCAAAATCAGCAA
ATTTGACTTCTTAGTAGCCACTTCACAAAGCAAAATGAAATCCAGTGAAGAAATGATCAAAAGTGAGCTG
GCAACCTTTGACCTTTCTGTTCAAGGATCACACAAGAGGAGTTTGAGCCTTGGTGATAAAGAAATAAGCC
GTTCTTCTCCTTCTCCAGCTTTGGAGCAGCCTTTCAGAGACCGTTCCAATACTCTGAATGAGAAGCCCGC
CCTGCCCGTCATCCGAGACAAGTACAAAGACCTGACGGGAGAGGTGGAGGAAAATGAGAGATATGCATAT
GAATGGCAGAGATGCCTGGGGAGTGCCCTGAATGTCATTAAGAAGGCAAATGATACCTTAAATGGAATCA
GTAGTAGTTCTGTTTGCACAGAAGTAATTCAGTCAGCTCAAGGCATGGAATATTTATTAGGTGTTGTTGA
AGTGTACAGGGTAACCAAGCGTGTGGAGCTGGGGATAAAAGCCACTGCAGTGTGCAGTGAGAAACTCCAG
CAGTTGCTGAAGGACATCGATAAAGTATGGAATAACCTAATCGGCTTCATGTCACTCGCCACACTCACAC
CAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACGGCCTGGGATTAAAAATGCTCAGGAGCTTGC
CTGTGGAGTGTGCCTCTTGAATGTGGACTCGAGGAGCCGGAAAGAAGAGAAGCCTGCAGAAGAACATCCT
AAAAAAGCATTCAACTCAGAAACAGACAGTTTCAAGCTGGCCTATGGAGGGCACCAGTATCACGCCAGCT
GTGCCAACTTCTGGATCAACTGTGTCGAACCAAAGCCTCCTGGCCTCGTCCTGCCTGACCTGCTCTGA

Translation (1235 aa):
MALRPGAGSGGGGAAGAGAGSAGGGGFMFPVAGGIRPPQGLMPMQQQGFPMVSVMQPNMQGIMGMNYSSQ
MSQGPIAMQAGIPMGPMPAAGMPYLGQAPFLGMRPPGPQYTPDMQKQFAEEQQKRFEQQQKLLEEERKRR
QFEEQKQKLRLLSSVKPKTGEKSRDDALEAIKGNLDGFSRDAKMHPTPASHPKKPGVGVFPSQDPAQPRM
PPWIYNESLVPDAYKKILETTMTPTGIDTAKLYPILMSSGLPRETLGQIWALANRTTPGKLTKEELYTVL
AMIAVTQRGVPAMSPDALNQFPAAPIPTLSGFSMTLPTPVSQPTVIPSGPAGSMPLSLGQPVMGINLVGP
VGGAAAQASSGFIPTYPANQVVKPEEDDFQDFQDASKSGSLDDSFSDFQELPASSKTSNSQHGNSAPSLL
MPLPGTKALPSMDKYAVFKGIAADKSSENTVPPGDPGDKYSAFRELEQTAENKPLGESFAEFRSAGTDDG
FTDFKTADSVSPLEPPTKDKTFPPSFPSGTIQQKQQTQVKNPLNLADLDMFSSVNCSSEKPLSFSAVFST
SKSVSTPQSTGSAATMTALAATKTSSLADDFGEFSLFGEYSGLAPVGEQDDFADFMAFSNSSISSEQKPD
DKYDALKEEASPVPLTSNVGSTVKGGQNSTAASTKYDVFRQLSLEGSGLGVEDLKDNTPSGKSDDDFADF
HSSKFSSINSDKSLGEKAVAFRHTKEDSASVKSLDLPSIGGSSVGKEDSEDALSVQFDMKLADVGGDLKH
VMSDSSLDLPTVSGQHPPAADIEDLKYAAFGSYSSNFAVSTLTSYDWSDRDDATQGRKLSPFVLSAGSGS
PSATSILQKKETSFGSSENITMTSLSKVTTFVSEDALPETTFPALASFKDTIPQTSEQKEYENRDYKDFT
KQDLPTAERSQEATCPSPASSGASQETPNECSDDFGEFQSEKPKISKFDFLVATSQSKMKSSEEMIKSEL
ATFDLSVQGSHKRSLSLGDKEISRSSPSPALEQPFRDRSNTLNEKPALPVIRDKYKDLTGEVEENERYAY
EWQRCLGSALNVIKKANDTLNGISSSSVCTEVIQSAQGMEYLLGVVEVYRVTKRVELGIKATAVCSEKLQ
QLLKDIDKVWNNLIGFMSLATLTPDENSLDFSSCMLRPGIKNAQELACGVCLLNVDSRSRKEEKPAEEHP
KKAFNSETDSFKLAYGGHQYHASCANFWINCVEPKPPGLVLPDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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