NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS59069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59069.1 Public Homo sapiens 7 SLC12A9 24 110 108 CCDS HistoryNCBI Gene:56996Re-query CCDS DB by CCDS ID:59069.1Re-query CCDS DB by GeneID:56996See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59069.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415287.5 ENSP00000413796.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415287.5Link to Ensembl Protein Viewer:ENSP00000413796.1Re-query CCDS DB by Nucleotide ID:ENST00000415287Re-query CCDS DB by Protein ID:ENSP00000413796
Original member Current member NCBI NM_001267814.2 NP_001254743.1 Accepted alive Link to Nucleotide Sequence:NM_001267814.2Link to Protein Sequence:NP_001254743.1Re-query CCDS DB by Nucleotide ID:NM_001267814Re-query CCDS DB by Protein ID:NP_001254743Link to BLAST:NP_001254743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254743.1 538 Q9BXP2-2 538 100% 0 0

Chromosomal Locations for CCDS 59069.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100854198 100854378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100856868 100857176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100858835 100858942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100859050 100859161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100859885 100860042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100860150 100860232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100861138 100861262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100861392 100861584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100861737 100861911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100862681 100862827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100865360 100865385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGCCAGCGAGAGCTCACCTCTGCTGGCCTACCGGCTCCTGGGGGAGGAGGGGGTTGCCCTCCCTGCCA
ATGGGGCCGGGGGTCCTGGAGGGGCGTCTGCCCGGAAGCTGTCCACCTTCCTGGGTGTGGTGGTGCCCAC
TGTCCTGTCCATGTTCAGCATAGTTGTTTTTCTGAGGATTGATGCCACAGGGCCCAGTGGGCTCCGGGTC
CTGCCCCAGGGCTACGGCTGGAACCTGCTGTATGGCTCCCTGCTGCTGGGCCTTGTGGGTGGGGTCTGCA
CCCTGGGAGCCGGCCTCTATGCCCGGGCCTCATTCCTCACATTCCTGCTGGTCTCTGGCTCCCTGGCCTC
TGTGCTCATCAGTTTTGTGGCTGTGGGGCCGAGGGACATCCGCTTGACTCCTAGGCCTGGCCCCAATGGC
TCCTCCCTGCCGCCCCGGTTTGGCCACTTCACCGGCTTCAACAGCAGTACCCTGAAGGACAACTTGGGCG
CTGGCTATGCTGAGGACTACACCACGGGAGCCGTGATGAATTTTGCCAGCGTCTTTGCTGTCCTCTTTAA
CGGCTGTACAGGCATCATGGCTGGGGCCAACATGTCAGGGGAGCTGAAGGACCCCAGCCGGGCGATCCCT
CTGGGCACGATCGTCGCCGTCGCCTACACCTTCTTCGTCTATGTCCTGCTTTTCTTTCTCTCCAGCTTCA
CTTGTGACAGGACCCTGCTGCAGGAAGACTATGGGTTCTTCCGCGCCATCAGCCTGTGGCCCCCACTGGT
GTTGATCGGAATCTATGCCACAGCGCTCTCAGCGTCCATGAGCTCGCTCATTGGTGCCTCCCGCATCCTC
CATGCCCTGGCCCGGGATGACCTCTTTGGCGTGATCTTGGCACCGGCCAAGGTTGTGTCCCGAGGGGGAA
ACCCCTGGGCAGCTGTACTTTATTCTTGGGGCCTGGTGCAGCTGGTGCTCCTGGCTGGGAAGCTGAACAC
ACTGGCTGCTGTGGTCACTGTCTTCTACCTGGTGGCCTATGCTGCCGTGGACCTGTCCTGCCTGAGCCTG
GAGTGGGCCTCGGCCCCCAACTTCCGCCCCACCTTCAGCCTGTTCTCCTGGCACACCTGCCTGCTGGGGG
TGGCCTCCTGCCTGCTCATGATGTTCCTCATCAGTCCTGGCGCGGCTGGTGGCTCCCTGCTCCTCATGGG
TCTGCTGGCTGCCCTGCTCACCGCGCGAGGAGGCCCCAGTAGCTGGGGCTATGTCAGCCAGGCCTTGCTT
TTCCACCAGGTGCGTAAGTATCTGCTTCGGCTGGACGTCCGGAAGGATCACGTGAAGTTCTGGCGGCCCC
AGCTGCTGCTCCTGGTGGGGAACCCCCGGGGCGCCCTGCCTCTGCTGCGGTTGGCCAACCAGCTTAAGAA
GGGGGGGCTGTATGTGCTGGGCCACGTCACCCTGGGAGACCTCGACTCCCTGCCCTCGGACCCTGTACAG
CCGCAGTATGGGGCATGGCTCAGCCTGGTGGACCGTGCCCAGGTGAAGGCTTTTGTGGATCTAACCCTCT
CACCCTCCGTGCGCCAGGGGGCTCAGCATCTGCTGCGAATCTCCGGCCTCGAGTCAAACTCGCATCCCCT
GCCGTGA

Translation (538 aa):
MASESSPLLAYRLLGEEGVALPANGAGGPGGASARKLSTFLGVVVPTVLSMFSIVVFLRIDATGPSGLRV
LPQGYGWNLLYGSLLLGLVGGVCTLGAGLYARASFLTFLLVSGSLASVLISFVAVGPRDIRLTPRPGPNG
SSLPPRFGHFTGFNSSTLKDNLGAGYAEDYTTGAVMNFASVFAVLFNGCTGIMAGANMSGELKDPSRAIP
LGTIVAVAYTFFVYVLLFFLSSFTCDRTLLQEDYGFFRAISLWPPLVLIGIYATALSASMSSLIGASRIL
HALARDDLFGVILAPAKVVSRGGNPWAAVLYSWGLVQLVLLAGKLNTLAAVVTVFYLVAYAAVDLSCLSL
EWASAPNFRPTFSLFSWHTCLLGVASCLLMMFLISPGAAGGSLLLMGLLAALLTARGGPSSWGYVSQALL
FHQVRKYLLRLDVRKDHVKFWRPQLLLLVGNPRGALPLLRLANQLKKGGLYVLGHVTLGDLDSLPSDPVQ
PQYGAWLSLVDRAQVKAFVDLTLSPSVRQGAQHLLRISGLESNSHPLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH