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Report for CCDS59068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59068.1 Public Homo sapiens 7 SLC12A9 24 110 108 CCDS HistoryNCBI Gene:56996Re-query CCDS DB by CCDS ID:59068.1Re-query CCDS DB by GeneID:56996See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 59068.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540482.5 ENSP00000443702.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540482.5Link to Ensembl Protein Viewer:ENSP00000443702.1Re-query CCDS DB by Nucleotide ID:ENST00000540482Re-query CCDS DB by Protein ID:ENSP00000443702
Original member Current member NCBI NM_001267812.2 NP_001254741.1 Accepted alive Link to Nucleotide Sequence:NM_001267812.2Link to Protein Sequence:NP_001254741.1Re-query CCDS DB by Nucleotide ID:NM_001267812Re-query CCDS DB by Protein ID:NP_001254741Link to BLAST:NP_001254741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254741.1 631 Q9BXP2-4 631 100% 0 0

Chromosomal Locations for CCDS 59068.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100854198 100854378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100854620 100854754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100855706 100855837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100856868 100857176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100858835 100858942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100859050 100859161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100859885 100860042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100860150 100860232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100861138 100861262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100861392 100861584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100861737 100861911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100862681 100862827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100865287 100865324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGGCCAGCGAGAGCTCACCTCTGCTGGCCTACCGGCTCCTGGGGGAGGAGGGGGTTGCCCTCCCTGCCA
ATGGGGCCGGGGGTCCTGGAGGGGCGTCTGCCCGGAAGCTGTCCACCTTCCTGGGTGTGGTGGTGCCCAC
TGTCCTGTCCATGTTCAGCATAGTTGTTTTTCTGAGGATTGGGTTCGTGGTGGGTCATGCTGGGCTACTG
CAGGCCCTGGCCATGCTGCTGGTTGCCTACTTCATCCTGGCACTCACCGTCCTCTCTGTCTGTGCCATCG
CCACCAATGGAGCCGTGCAGGGGGGCGGAGCCTACTTCATGATCAGCCGCACACTGGGGCCCGAGGTCGG
GGGCAGCATTGGGCTCATGTTCTACCTGGCTAACGTCTGTGGCTGTGCCGTCTCCCTCCTGGGGCTGGTG
GAGTCTGTGCTTGATGTCTTCGGGGCCGATGCCACAGGGCCCAGTGGGCTCCGGGTCCTGCCCCAGGGCT
ACGGCTGGAACCTGCTGTATGGCTCCCTGCTGCTGGGCCTTGTGGGTGGGGTCTGCACCCTGGGAGCCGG
CCTCTATGCCCGGGCCTCATTCCTCACATTCCTGCTGGTCTCTGGCTCCCTGGCCTCTGTGCTCATCAGT
TTTGTGGCTGTGGGGCCGAGGGACATCCGCTTGACTCCTAGGCCTGGCCCCAATGGCTCCTCCCTGCCGC
CCCGGTTTGGCCACTTCACCGGCTTCAACAGCAGTACCCTGAAGGACAACTTGGGCGCTGGCTATGCTGA
GGACTACACCACGGGAGCCGTGATGAATTTTGCCAGCGTCTTTGCTGTCCTCTTTAACGGCTGTACAGGC
ATCATGGCTGGGGCCAACATGTCAGGGGAGCTGAAGGACCCCAGCCGGGCGATCCCTCTGGGCACGATCG
TCGCCGTCGCCTACACCTTCTTCGTCTATGTCCTGCTTTTCTTTCTCTCCAGCTTCACTTGTGACAGGAC
CCTGCTGCAGGAAGACTATGGGTTCTTCCGCGCCATCAGCCTGTGGCCCCCACTGGTGTTGATCGGAATC
TATGCCACAGCGCTCTCAGCGTCCATGAGCTCGCTCATTGGTGCCTCCCGCATCCTCCATGCCCTGGCCC
GGGATGACCTCTTTGGCGTGATCTTGGCACCGGCCAAGGTTGTGTCCCGAGGGGGAAACCCCTGGGCAGC
TGTACTTTATTCTTGGGGCCTGGTGCAGCTGGTGCTCCTGGCTGGGAAGCTGAACACACTGGCTGCTGTG
GTCACTGTCTTCTACCTGGTGGCCTATGCTGCCGTGGACCTGTCCTGCCTGAGCCTGGAGTGGGCCTCGG
CCCCCAACTTCCGCCCCACCTTCAGCCTGTTCTCCTGGCACACCTGCCTGCTGGGGGTGGCCTCCTGCCT
GCTCATGATGTTCCTCATCAGTCCTGGCGCGGCTGGTGGCTCCCTGCTCCTCATGGGTCTGCTGGCTGCC
CTGCTCACCGCGCGAGGAGGCCCCAGTAGCTGGGGCTATGTCAGCCAGGCCTTGCTTTTCCACCAGGTGC
GTAAGTATCTGCTTCGGCTGGACGTCCGGAAGGATCACGTGAAGTTCTGGCGGCCCCAGCTGCTGCTCCT
GGTGGGGAACCCCCGGGGCGCCCTGCCTCTGCTGCGGTTGGCCAACCAGCTTAAGAAGGGGGGGCTGTAT
GTGCTGGGCCACGTCACCCTGGGAGACCTCGACTCCCTGCCCTCGGACCCTGTACAGCCGCAGTATGGGG
CATGGCTCAGCCTGGTGGACCGTGCCCAGGTGAAGGCTTTTGTGGATCTAACCCTCTCACCCTCCGTGCG
CCAGGGGGCTCAGCATCTGCTGCGAATCTCCGGCCTCGAGTCTGGGACGCTATTACCCTGGGGATTCAGG
TCATGA

Translation (631 aa):
MASESSPLLAYRLLGEEGVALPANGAGGPGGASARKLSTFLGVVVPTVLSMFSIVVFLRIGFVVGHAGLL
QALAMLLVAYFILALTVLSVCAIATNGAVQGGGAYFMISRTLGPEVGGSIGLMFYLANVCGCAVSLLGLV
ESVLDVFGADATGPSGLRVLPQGYGWNLLYGSLLLGLVGGVCTLGAGLYARASFLTFLLVSGSLASVLIS
FVAVGPRDIRLTPRPGPNGSSLPPRFGHFTGFNSSTLKDNLGAGYAEDYTTGAVMNFASVFAVLFNGCTG
IMAGANMSGELKDPSRAIPLGTIVAVAYTFFVYVLLFFLSSFTCDRTLLQEDYGFFRAISLWPPLVLIGI
YATALSASMSSLIGASRILHALARDDLFGVILAPAKVVSRGGNPWAAVLYSWGLVQLVLLAGKLNTLAAV
VTVFYLVAYAAVDLSCLSLEWASAPNFRPTFSLFSWHTCLLGVASCLLMMFLISPGAAGGSLLLMGLLAA
LLTARGGPSSWGYVSQALLFHQVRKYLLRLDVRKDHVKFWRPQLLLLVGNPRGALPLLRLANQLKKGGLY
VLGHVTLGDLDSLPSDPVQPQYGAWLSLVDRAQVKAFVDLTLSPSVRQGAQHLLRISGLESGTLLPWGFR
S


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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