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Report for CCDS58971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58971.1 Public Homo sapiens 5 PKD2L2 24 110 108 CCDS HistoryNCBI Gene:27039Re-query CCDS DB by CCDS ID:58971.1Re-query CCDS DB by GeneID:27039See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000508638.5 ENSP00000423382.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508638.5Link to Ensembl Protein Viewer:ENSP00000423382.1Re-query CCDS DB by Nucleotide ID:ENST00000508638Re-query CCDS DB by Protein ID:ENSP00000423382
Original member Current member NCBI NM_001258449.2 NP_001245378.1 Accepted alive Link to Nucleotide Sequence:NM_001258449.2Link to Protein Sequence:NP_001245378.1Re-query CCDS DB by Nucleotide ID:NM_001258449Re-query CCDS DB by Protein ID:NP_001245378Link to BLAST:NP_001245378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245378.1 523 Q9NZM6-6 523 100% 0 0

Chromosomal Locations for CCDS 58971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137889492 137889522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137890481 137890582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137892480 137892613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137894353 137894609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137899516 137899737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137906206 137906434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137907742 137907912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137923420 137923521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137925040 137925104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137925875 137925929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137935797 137935909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137936320 137936410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGGCTGAGGCGTCACGGTGGCACCGAGGCGGGGCTTCGAAACATAAGTTGCATTACAGAAAGGAAGTAG
AAATTACAACCACACTTCAGGAATTGTTACTCTACTTTATTTTTTTAATAAACCTATGTATATTGACTTT
TGGGATGGTAAACCCACATATGTATTACTTAAACAAGGTTATGTCATCTCTATTTTTGGACACTTCTGTG
CCTGGTGAAGAAAGAACCAACTTTAAGTCCATTCGCAGCATAACTGATTTTTGGAAGTTTATGGAAGGAC
CCCTTTTGGAAGGTCTGTACTGGGATTCATGGTACAATAACCAGCAGCTGTATAATTTAAAGAACAGCAG
TCGCATCTACTATGAAAATATACTTCTAGGAGTTCCCAGAGTTCGTCAACTAAAAGTCCGCAACAACACA
TGCAAAGTCTATTCATCTTTTCAGTCTTTGATGAGTGAATGTTATGGCAAATATACTTCTGCAAATGAAG
ACCTCTCTAATTTTGGCCTTCAAATTAATACTGAATGGAGATATTCTACTTCTAATACCAACTCCCCTTG
GCACTGGGGATTTCTTGGTGTTTACCGAAATGGGGGATACATTTTCACTTTATCAAAATCGAAATCTGAA
ACCAAAAACAAGTTCATTGACCTTCGACTGAACAGCTGGATCACAAGAGGGACTAGAGTTATTTTTATTG
ATTTTTCCTTATATAATGCTAATGTAAATCTATTTTGTATTATCAGATTGGTGGCAGAATTCCCTGCAAC
TGGAGGAATACTTACTTCATGGCAGTTTTACTCTGTGAAGCTCCTCAGATATGTTAGCTACTATGACTAT
TTTATTGCTTCCTGTGAAATCACATTCTGTATTTTTCTTTTTGTCTTCACAACACAAGAAGTCAAAAAAA
TAAAAGAATTTAAGTCTGCCTATTTCAAAAGTATTTGGAACTGGCTAGAATTGCTACTTTTGCTGTTGTG
TTTTGTGGCTGTTTCCTTCAACACATACTATAATGTACAAATTTTTCTCTTACTTGGACAGCTGTTGAAA
AGTACTGAAAAATATTCAGATTTCTATTTTCTTGCATGCTGGCACATTTATTACAATAATATAATTGCTA
TTACCATCTTTTTTGCATGGATAAAGAATATGTTCTTGGCAATTATTAATGATACCTATTCTGAAGTGAA
AGCTGACTATTCAATAGGCAGAAGGCTAGATTTTGAACTTGGCAAAATGATTAAACAGAGTTACAAAAAT
GTTCTCGAGAAATTCAGACTGAAGAAAGCTCAAAAAGATGAAGACAAGAAAACCAAAGGCAGCGGAGATT
TGGCTGAACAAGCCAGAAGAGAAGGCTTTGACGAAAATGAGATTCAAAACGCAGAGCAGATGAAAAAATG
GAAAGAGAGGCTTGAGAAAAAGTATTATTCTATGGAAATTCAAGATGACTACCAGCCTGTCACTCAAGAA
GAATTTCGAGAACTTTTTTTATATGCTGTGGAGCTGGAGAAGGAATTACACTACATCAATTTGAAGCTAA
ATCAAGTGGTGAGAAAGGTTTCAGCTCTATAG

Translation (523 aa):
MAEASRWHRGGASKHKLHYRKEVEITTTLQELLLYFIFLINLCILTFGMVNPHMYYLNKVMSSLFLDTSV
PGEERTNFKSIRSITDFWKFMEGPLLEGLYWDSWYNNQQLYNLKNSSRIYYENILLGVPRVRQLKVRNNT
CKVYSSFQSLMSECYGKYTSANEDLSNFGLQINTEWRYSTSNTNSPWHWGFLGVYRNGGYIFTLSKSKSE
TKNKFIDLRLNSWITRGTRVIFIDFSLYNANVNLFCIIRLVAEFPATGGILTSWQFYSVKLLRYVSYYDY
FIASCEITFCIFLFVFTTQEVKKIKEFKSAYFKSIWNWLELLLLLLCFVAVSFNTYYNVQIFLLLGQLLK
STEKYSDFYFLACWHIYYNNIIAITIFFAWIKNMFLAIINDTYSEVKADYSIGRRLDFELGKMIKQSYKN
VLEKFRLKKAQKDEDKKTKGSGDLAEQARREGFDENEIQNAEQMKKWKERLEKKYYSMEIQDDYQPVTQE
EFRELFLYAVELEKELHYINLKLNQVVRKVSAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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