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Report for CCDS5875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5875.1 Public Homo sapiens 7 TRPV5 24 110 108 CCDS HistoryNCBI Gene:56302Re-query CCDS DB by CCDS ID:5875.1Re-query CCDS DB by GeneID:56302See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5875.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265310.6 ENSP00000265310.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265310.6Link to Ensembl Protein Viewer:ENSP00000265310.1Re-query CCDS DB by Nucleotide ID:ENST00000265310Re-query CCDS DB by Protein ID:ENSP00000265310
Original member Current member NCBI NM_019841.7 NP_062815.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019841.7Link to Protein Sequence:NP_062815.3Re-query CCDS DB by Nucleotide ID:NM_019841Re-query CCDS DB by Protein ID:NP_062815Link to BLAST:NP_062815.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062815.3 729 Q9NQA5-1 729 100% 0 0

Chromosomal Locations for CCDS 5875.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142908514 142908808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142909490 142909596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142912482 142912750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142914640 142914706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142914881 142915046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142915307 142915383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142915482 142915568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142925529 142925741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142928088 142928234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142928691 142928866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142929022 142929120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142929428 142929565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142930058 142930180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142930349 142930446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142933332 142933459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGGGGGGTTTTCTACCTAAGGCAGAAGGGCCCGGGAGCCAACTCCAGAAACTTCTGCCCTCCTTTCTGG
TCAGAGAACAAGACTGGGACCAGCACCTGGACAAGCTTCATATGCTGCAGCAGAAGAGGATTCTAGAGTC
TCCACTGCTTCGAGCATCCAAGGAAAATGACCTGTCTGTTCTTAGGCAACTTCTACTGGACTGCACCTGT
GACGTTCGACAAAGAGGAGCCCTGGGGGAGACGGCGCTGCACATAGCAGCCCTCTATGACAACTTGGAGG
CGGCCTTGGTGCTGATGGAGGCTGCCCCAGAGCTGGTCTTTGAGCCCACCACATGTGAGGCTTTTGCAGG
TCAGACTGCACTGCACATCGCTGTTGTGAACCAGAATGTGAACCTGGTGCGTGCCCTGCTCACCCGCAGG
GCCAGTGTCTCTGCCAGAGCCACAGGCACTGCCTTCCGCCATAGTCCCCGCAACCTCATCTACTTTGGGG
AGCACCCTTTGTCCTTTGCTGCCTGTGTGAACAGCGAGGAGATCGTGCGGCTGCTCATTGAGCATGGAGC
TGACATCAGGGCCCAGGACTCCCTGGGAAACACAGTATTACACATCCTCATCCTCCAGCCCAACAAAACC
TTTGCCTGCCAGATGTACAACCTGCTGCTGTCCTATGATGGACATGGGGACCACCTGCAGCCCCTGGACC
TTGTGCCCAATCACCAGGGTCTCACCCCCTTCAAGCTGGCTGGAGTGGAGGGTAACACTGTGATGTTCCA
GCACCTGATGCAGAAGCGGAGGCACATCCAGTGGACGTATGGACCCCTGACCTCCATTCTCTACGACCTC
ACGGAGATCGACTCCTGGGGAGAGGAGCTGTCCTTCCTGGAGCTTGTGGTCTCCTCTGATAAACGAGAGG
CTCGCCAAATTCTGGAACAGACCCCAGTGAAGGAGCTGGTGAGCTTCAAGTGGAACAAGTATGGCCGGCC
GTACTTCTGCATCCTGGCTGCCTTGTACCTGCTCTACATGATCTGCTTTACTACGTGCTGCGTCTACCGC
CCCCTTAAGTTTCGTGGTGGCAACCGCACTCATTCTCGAGACATCACCATCCTCCAGCAAAAACTACTAC
AGGAGGCCTATGAGACACGTGAAGATATCATCAGGCTGGTGGGGGAGCTGGTGAGCATCGTTGGGGCTGT
GATCATCCTGCTCCTAGAGATTCCAGACATCTTCAGGGTTGGTGCCTCTCGCTATTTTGGAAAGACGATT
CTTGGGGGGCCATTCCATGTCATCATCATCACCTATGCCTCCCTGGTGCTGGTGACCATGGTGATGCGGC
TCACCAACACCAATGGGGAGGTGGTGCCCATGTCCTTTGCCCTGGTGCTGGGCTGGTGCAGTGTCATGTA
TTTCACTCGAGGATTCCAGATGCTGGGTCCCTTCACCATCATGATCCAGAAGATGATTTTTGGAGACCTA
ATGCGTTTCTGCTGGCTGATGGCTGTGGTCATCTTGGGATTTGCCTCCGCGTTCTATATCATTTTCCAGA
CAGAGGACCCAACCAGTCTGGGGCAATTCTATGACTACCCCATGGCACTGTTCACCACCTTTGAGCTTTT
TCTCACTGTTATTGATGCACCTGCCAACTACGACGTGGACTTGCCCTTCATGTTCAGCATTGTCAACTTC
GCCTTCACCATCATTGCCACACTGCTCATGCTCAACTTGTTCATCGCCATGATGGGCGACACCCACTGGA
GGGTGGCCCAGGAGAGGGATGAGCTCTGGAGGGCCCAGGTCGTGGCCACCACAGTGATGCTGGAGCGGAA
GCTGCCTCGCTGCCTGTGGCCTCGCTCCGGGATCTGTGGGTGCGAATTCGGGCTGGGGGACCGCTGGTTC
CTGCGGGTTGAGAACCACAATGATCAGAATCCTCTGCGAGTGCTTCGCTATGTGGAAGTGTTCAAGAACT
CAGACAAGGAGGATGACCAGGAGCATCCATCTGAGAAACAGCCCTCTGGGGCTGAGAGTGGGACTCTAGC
CAGAGCCTCTTTGGCTCTTCCAACTTCCTCCCTGTCCCGGACCGCGTCCCAGAGCAGCAGTCACCGAGGC
TGGGAGATCCTTCGTCAAAACACCCTGGGGCACTTGAATCTTGGACTGAACCTTAGTGAGGGGGATGGAG
AGGAGGTCTACCATTTTTGA

Translation (729 aa):
MGGFLPKAEGPGSQLQKLLPSFLVREQDWDQHLDKLHMLQQKRILESPLLRASKENDLSVLRQLLLDCTC
DVRQRGALGETALHIAALYDNLEAALVLMEAAPELVFEPTTCEAFAGQTALHIAVVNQNVNLVRALLTRR
ASVSARATGTAFRHSPRNLIYFGEHPLSFAACVNSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT
FACQMYNLLLSYDGHGDHLQPLDLVPNHQGLTPFKLAGVEGNTVMFQHLMQKRRHIQWTYGPLTSILYDL
TEIDSWGEELSFLELVVSSDKREARQILEQTPVKELVSFKWNKYGRPYFCILAALYLLYMICFTTCCVYR
PLKFRGGNRTHSRDITILQQKLLQEAYETREDIIRLVGELVSIVGAVIILLLEIPDIFRVGASRYFGKTI
LGGPFHVIIITYASLVLVTMVMRLTNTNGEVVPMSFALVLGWCSVMYFTRGFQMLGPFTIMIQKMIFGDL
MRFCWLMAVVILGFASAFYIIFQTEDPTSLGQFYDYPMALFTTFELFLTVIDAPANYDVDLPFMFSIVNF
AFTIIATLLMLNLFIAMMGDTHWRVAQERDELWRAQVVATTVMLERKLPRCLWPRSGICGCEFGLGDRWF
LRVENHNDQNPLRVLRYVEVFKNSDKEDDQEHPSEKQPSGAESGTLARASLALPTSSLSRTASQSSSHRG
WEILRQNTLGHLNLGLNLSEGDGEEVYHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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