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Report for CCDS5874.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5874.2 Public Homo sapiens 7 TRPV6 24 110 108 CCDS HistoryNCBI Gene:55503Re-query CCDS DB by CCDS ID:5874.2Re-query CCDS DB by GeneID:55503See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 5874.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript, conservation and publication evidence. The update uses a non-AUG (ACG) start codon, supported by data in PMID:23612980.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 5874.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359396.9 ENSP00000352358.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359396.9Link to Ensembl Protein Viewer:ENSP00000352358.5Re-query CCDS DB by Nucleotide ID:ENST00000359396Re-query CCDS DB by Protein ID:ENSP00000352358
Original member Current member NCBI NM_018646.6 NP_061116.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018646.6Link to Protein Sequence:NP_061116.5Re-query CCDS DB by Nucleotide ID:NM_018646Re-query CCDS DB by Protein ID:NP_061116Link to BLAST:NP_061116.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061116.5 765 Q9H1D0-1 765 100% 0 0

Chromosomal Locations for CCDS 5874.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142871707 142871989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142872372 142872478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142873448 142873716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142874076 142874142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142874491 142874656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142874904 142874980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142875078 142875164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142875468 142875680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142875758 142875904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142876408 142876583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142876739 142876837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142877142 142877279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142877651 142877773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142877929 142878026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142885389 142885636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol T (codon ACG) with M at amino acid position 1

Nucleotide Sequence (2298 nt):
ACGGGACCTCTACAGGGAGACGGTGGGCCGGCCCTTGGGGGGGCTGATGTGGCCCCAAGGCTGAGTCCCG
TCAGGGTCTGGCCTCGGCCTCAGGCCCCCAAGGAGCCGGCCCTACACCCCATGGGTTTGTCACTGCCCAA
GGAGAAAGGGCTAATTCTCTGCCTATGGAGCAAGTTCTGCAGATGGTTCCAGAGACGGGAGTCCTGGGCC
CAGAGCCGAGATGAGCAGAACCTGCTGCAGCAGAAGAGGATCTGGGAGTCTCCTCTCCTTCTAGCTGCCA
AAGATAATGATGTCCAGGCCCTGAACAAGTTGCTCAAGTATGAGGATTGCAAGGTGCACCAGAGAGGAGC
CATGGGGGAAACAGCGCTACACATAGCAGCCCTCTATGACAACCTGGAGGCCGCCATGGTGCTGATGGAG
GCTGCCCCGGAGCTGGTCTTTGAGCCCATGACATCTGAGCTCTATGAGGGTCAGACTGCACTGCACATCG
CTGTTGTGAACCAGAACATGAACCTGGTGCGAGCCCTGCTTGCCCGCAGGGCCAGTGTCTCTGCCAGAGC
CACAGGCACTGCCTTCCGCCGTAGTCCCTGCAACCTCATCTACTTTGGGGAGCACCCTTTGTCCTTTGCT
GCCTGTGTGAACAGTGAGGAGATCGTGCGGCTGCTCATTGAGCATGGAGCTGACATCCGGGCCCAGGACT
CCCTGGGAAACACAGTGTTACACATCCTCATCCTCCAGCCCAACAAAACCTTTGCCTGCCAGATGTACAA
CCTGTTGCTGTCCTACGACAGACATGGGGACCACCTGCAGCCCCTGGACCTCGTGCCCAATCACCAGGGT
CTCACCCCTTTCAAGCTGGCTGGAGTGGAGGGTAACACTGTGATGTTTCAGCACCTGATGCAGAAGCGGA
AGCACACCCAGTGGACGTATGGACCACTGACCTCGACTCTCTATGACCTCACAGAGATCGACTCCTCAGG
GGATGAGCAGTCCCTGCTGGAACTTATCATCACCACCAAGAAGCGGGAGGCTCGCCAGATCCTGGACCAG
ACGCCGGTGAAGGAGCTGGTGAGCCTCAAGTGGAAGCGGTACGGGCGGCCGTACTTCTGCATGCTGGGTG
CCATATATCTGCTGTACATCATCTGCTTCACCATGTGCTGCATCTACCGCCCCCTCAAGCCCAGGACCAA
TAACCGCACGAGCCCCCGGGACAACACCCTCTTACAGCAGAAGCTACTTCAGGAAGCCTACATGACCCCT
AAGGACGATATCCGGCTGGTCGGGGAGCTGGTGACTGTCATTGGGGCTATCATCATCCTGCTGGTAGAGG
TTCCAGACATCTTCAGAATGGGGGTCACTCGCTTCTTTGGACAGACCATCCTTGGGGGCCCATTCCATGT
CCTCATCATCACCTATGCCTTCATGGTGCTGGTGACCATGGTGATGCGGCTCATCAGTGCCAGCGGGGAG
GTGGTACCCATGTCCTTTGCACTCGTGCTGGGCTGGTGCAACGTCATGTACTTCGCCCGAGGATTCCAGA
TGCTAGGCCCCTTCACCATCATGATTCAGAAGATGATTTTTGGCGACCTGATGCGATTCTGCTGGCTGAT
GGCTGTGGTCATCCTGGGCTTTGCTTCAGCCTTCTATATCATCTTCCAGACAGAGGACCCCGAGGAGCTA
GGCCACTTCTACGACTACCCCATGGCCCTGTTCAGCACCTTCGAGCTGTTCCTTACCATCATCGATGGCC
CAGCCAACTACAACGTGGACCTGCCCTTCATGTACAGCATCACCTATGCTGCCTTTGCCATCATCGCCAC
ACTGCTCATGCTCAACCTCCTCATTGCCATGATGGGCGACACTCACTGGCGAGTGGCCCATGAGCGGGAT
GAGCTGTGGAGGGCCCAGATTGTGGCCACCACAGTGATGCTGGAGCGGAAGCTGCCTCGCTGCCTGTGGC
CTCGCTCCGGGATCTGCGGACGGGAGTATGGCCTGGGAGACCGCTGGTTCCTGCGGGTGGAAGACAGGCA
AGATCTCAACCGGCAGCGGATCCAACGCTACGCACAGGCCTTCCACACCCGGGGCTCTGAGGATTTGGAC
AAAGACTCAGTGGAAAAACTAGAGCTGGGCTGTCCCTTCAGCCCCCACCTGTCCCTTCCTATGCCCTCAG
TGTCTCGAAGTACCTCCCGCAGCAGTGCCAATTGGGAAAGGCTTCGGCAAGGGACCCTGAGGAGAGACCT
GCGTGGGATAATCAACAGGGGTCTGGAGGACGGGGAGAGCTGGGAATATCAGATCTGA

Translation (765 aa):
MGPLQGDGGPALGGADVAPRLSPVRVWPRPQAPKEPALHPMGLSLPKEKGLILCLWSKFCRWFQRRESWA
QSRDEQNLLQQKRIWESPLLLAAKDNDVQALNKLLKYEDCKVHQRGAMGETALHIAALYDNLEAAMVLME
AAPELVFEPMTSELYEGQTALHIAVVNQNMNLVRALLARRASVSARATGTAFRRSPCNLIYFGEHPLSFA
ACVNSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDRHGDHLQPLDLVPNHQG
LTPFKLAGVEGNTVMFQHLMQKRKHTQWTYGPLTSTLYDLTEIDSSGDEQSLLELIITTKKREARQILDQ
TPVKELVSLKWKRYGRPYFCMLGAIYLLYIICFTMCCIYRPLKPRTNNRTSPRDNTLLQQKLLQEAYMTP
KDDIRLVGELVTVIGAIIILLVEVPDIFRMGVTRFFGQTILGGPFHVLIITYAFMVLVTMVMRLISASGE
VVPMSFALVLGWCNVMYFARGFQMLGPFTIMIQKMIFGDLMRFCWLMAVVILGFASAFYIIFQTEDPEEL
GHFYDYPMALFSTFELFLTIIDGPANYNVDLPFMYSITYAAFAIIATLLMLNLLIAMMGDTHWRVAHERD
ELWRAQIVATTVMLERKLPRCLWPRSGICGREYGLGDRWFLRVEDRQDLNRQRIQRYAQAFHTRGSEDLD
KDSVEKLELGCPFSPHLSLPMPSVSRSTSRSSANWERLRQGTLRRDLRGIINRGLEDGESWEYQI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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